Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27777 | Canola | cytosol | 54.09 | 81.13 |
| CDY18769 | Canola | nucleus | 50.31 | 75.47 |
| CDY18791 | Canola | nucleus | 50.63 | 75.23 |
| AT3G05327.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.8 | 71.7 |
| KRG96839 | Soybean | nucleus | 25.16 | 45.45 |
| VIT_14s0128g00410.t01 | Wine grape | nucleus | 25.79 | 38.5 |
| CDX95612 | Canola | cytosol | 22.96 | 36.87 |
| CDX83419 | Canola | cytosol | 22.96 | 36.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.36 | 36.4 |
| PGSC0003DMT400081162 | Potato | cytosol | 11.32 | 36.0 |
| CDY30482 | Canola | cytosol | 22.64 | 35.82 |
| CDY23452 | Canola | cytosol | 22.64 | 35.82 |
| CDY64256 | Canola | cytosol | 9.75 | 35.23 |
| CDY48257 | Canola | cytosol | 22.01 | 35.18 |
| Solyc01g098930.2.1 | Tomato | cytosol | 24.53 | 34.51 |
| PGSC0003DMT400008886 | Potato | nucleus | 24.53 | 34.51 |
| CDY56463 | Canola | cytosol | 23.9 | 34.23 |
| Os05t0398000-01 | Rice | cytosol | 14.78 | 34.06 |
| CDX76682 | Canola | cytosol | 23.58 | 33.94 |
| Zm00001d038133_P002 | Maize | nucleus | 24.53 | 33.05 |
| TraesCS1D01G248800.1 | Wheat | nucleus | 24.21 | 32.91 |
| CDX70040 | Canola | nucleus | 22.33 | 32.87 |
| TraesCS1B01G260000.1 | Wheat | nucleus | 24.53 | 32.64 |
| CDY65234 | Canola | nucleus | 22.01 | 32.41 |
| CDX74684 | Canola | cytosol | 22.96 | 32.3 |
| TraesCS1A01G249300.1 | Wheat | nucleus | 24.21 | 32.22 |
| EES19489 | Sorghum | cytosol | 23.27 | 31.22 |
| CDY55656 | Canola | cytosol | 9.12 | 30.21 |
| CDY08862 | Canola | cytosol | 19.5 | 29.38 |
| CDY02124 | Canola | nucleus | 10.38 | 29.2 |
| CDY38647 | Canola | cytosol | 18.87 | 28.57 |
| CDY54190 | Canola | cytosol | 18.87 | 28.57 |
| CDY18953 | Canola | mitochondrion, plastid | 18.55 | 26.58 |
| CDX74709 | Canola | mitochondrion, plastid | 18.55 | 26.58 |
| CDX67834 | Canola | cytosol | 18.55 | 25.54 |
| CDX95626 | Canola | mitochondrion, plastid | 17.92 | 25.45 |
| CDX83405 | Canola | mitochondrion, plastid | 17.92 | 25.45 |
| HORVU1Hr1G062210.1 | Barley | nucleus, plastid | 23.9 | 25.0 |
| CDX98427 | Canola | cytosol | 18.24 | 25.0 |
| CDY41156 | Canola | plastid | 18.24 | 24.89 |
| CDX71800 | Canola | plastid | 17.3 | 23.4 |
| CDY02123 | Canola | mitochondrion | 7.55 | 22.02 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | MapMan:18.1.2.2.3 | Gene3D:3.40.50.11350 | GO:A0A078EZQ5 | EnsemblPlants:CDY05158 |
| ProteinID:CDY05158 | ProteinID:CDY05158.1 | InterPro:Cyclin-like_sf | InterPro:Cyclin_PHO80-like | GO:GO:0000079 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSBRNA2T00119957001 | PFAM:PF08613 | PANTHER:PTHR15615 |
| PANTHER:PTHR15615:SF40 | SUPFAM:SSF47954 | UniParc:UPI0004EEC335 | : | : | : |
Description
BnaC05g46450D
Coordinates
chrLK031960:-:89450..90938
Molecular Weight (calculated)
36567.1 Da
IEP (calculated)
8.960
GRAVY (calculated)
-0.188
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: METSINSTTS SLFQWLGLIE DYDQPSTSTL PRVITLVALI LGKMIQKNEK SLHTRHNKLC FGGRDHYVPW IKNTSMNIHR YTERVYRYAH CSHACFVAAF
101: AYILRYLERP VDTSMTCRLT SLNVHRLLIT SLLVAAKFLD RKCYNNAYYA KIGGVSTEEM NRLEKTFLFD LDFRLNITTE MFEKHCLVLQ REAVPYDSSK
201: LISVLGEVSW REGLVPFEKK KLGVKEEVYG KYSYLIQSAI DYEVCLRADV FVGNSFSTFS SLIVLERTQK ARRLGFVSTC EDGGNVWRSY AYNLAGESEG
301: LPRRRMTNMT HSSLQAIS
101: AYILRYLERP VDTSMTCRLT SLNVHRLLIT SLLVAAKFLD RKCYNNAYYA KIGGVSTEEM NRLEKTFLFD LDFRLNITTE MFEKHCLVLQ REAVPYDSSK
201: LISVLGEVSW REGLVPFEKK KLGVKEEVYG KYSYLIQSAI DYEVCLRADV FVGNSFSTFS SLIVLERTQK ARRLGFVSTC EDGGNVWRSY AYNLAGESEG
301: LPRRRMTNMT HSSLQAIS
001: METSRNSTNS SLFQWLGLLE DSDQPPDSTP PRVITLLAST LEKMIQKNKK KFHTRHNKAD EITMFHGSKA PSLSIYRYTE RIHRYAQCSP VCFVAAFAYI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI
Arabidopsis Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3M7]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.