CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX83047
CDX87018
CDY05870
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60550.1	CDX68497	AT3G48750.1	15197472
AT3G60550.1	CDX83047	AT3G48750.1	15197472
AT3G60550.1	CDX87018	AT3G48750.1	15197472
AT3G60550.1	CDY05870	AT3G48750.1	15197472
AT3G60550.1	CDY66197	AT3G48750.1	15197472
AT3G60550.1	CDY67496	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007544.1-P	Field mustard	plastid	99.14	99.14
CDX71800	Canola	plastid	97.0	96.17
AT3G60550.1	Thale cress	mitochondrion, nucleus, plastid	91.85	93.04
CDX67834	Canola	cytosol	89.27	90.04
CDX98427	Canola	cytosol	87.98	88.36
CDX74709	Canola	mitochondrion, plastid	82.4	86.49
CDY18953	Canola	mitochondrion, plastid	81.97	86.04
CDX83405	Canola	mitochondrion, plastid	81.97	85.27
CDX95626	Canola	mitochondrion, plastid	81.97	85.27
KRG88936	Soybean	nucleus	69.96	73.09
KRH76137	Soybean	plastid	69.96	72.77
KRH65411	Soybean	cytosol, nucleus, plastid	69.1	71.88
Solyc01g090800.2.1	Tomato	cytosol	67.38	71.36
PGSC0003DMT400066949	Potato	nucleus	67.38	71.36
VIT_15s0021g02680.t01	Wine grape	plastid	69.96	71.18
GSMUA_Achr4P24630_001	Banana	nucleus	58.8	59.05
Os04t0552300-01	Rice	cytosol	44.64	47.93
Zm00001d002733_P001	Maize	cytosol	42.49	41.77
EES11236	Sorghum	cytosol	41.63	41.45
TraesCS2A01G413300.1	Wheat	cytosol	40.77	41.13
TraesCS2D01G411300.1	Wheat	cytosol	40.34	40.52
TraesCS2B01G432000.1	Wheat	cytosol	40.34	40.52
CDY23452	Canola	cytosol	33.48	38.81
CDY30482	Canola	cytosol	33.48	38.81
CDY64256	Canola	cytosol	14.59	38.64
CDY48257	Canola	cytosol	32.62	38.19
CDX95612	Canola	cytosol	32.19	37.88
CDX83419	Canola	cytosol	32.19	37.5
CDY55656	Canola	cytosol	15.02	36.46
CDX74684	Canola	cytosol	33.48	34.51
CDY54190	Canola	cytosol	30.47	33.81
CDY38647	Canola	cytosol	30.47	33.81
CDY02124	Canola	nucleus	16.31	33.63
CDY56463	Canola	cytosol	31.33	32.88
CDX70040	Canola	nucleus	30.47	32.87
CDX76682	Canola	cytosol	30.9	32.58
CDY65234	Canola	nucleus	30.04	32.41
CDY08862	Canola	cytosol	29.18	32.23
CDY18791	Canola	nucleus	28.76	31.31
CDY18769	Canola	nucleus	27.47	30.19
CDY27777	Canola	cytosol	26.61	29.25
CDY02123	Canola	mitochondrion	12.45	26.61
CDY05158	Canola	cytosol, nucleus, peroxisome	24.89	18.24

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.7	GO:A0A078HTY9	UniProt:A0A078HTY9	EnsemblPlants:CDY41156	ProteinID:CDY41156
ProteinID:CDY41156.1	InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	GO:GO:0000079	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EnsemblPlantsGene:GSBRNA2T00072553001	PFAM:PF08613	PIRSF:PIRSF027110
PANTHER:PTHR15615	PANTHER:PTHR15615:SF15	SUPFAM:SSF47954	UniParc:UPI0004EDD118	:	:

Description

BnaA09g38590DBnaA09g38590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTY9]

Coordinates

chrLK032492:-:83179..83969

Molecular Weight (calculated)

26864.4 Da

IEP (calculated)

9.587

GRAVY (calculated)

-0.245

Length

233 amino acids

Sequence
(BLAST)

001: MAVSNSLTIS PRKLRSDLYS YSNHDNTKTP LVISVLSSLI DRTLTRNQRI SRRASPASST SGRSGKTQIF DCREIPDMTI QSYLERIFRY TKAGPSVYVV
101: AYVYIDRFCQ LNPGFRISLA NVHRLLITTI MIASKYVEDL NYRNSYFAKV GGLETEDLNK LELEFLFLMG FKLHVNVSVF ESYCCHLERE VSFGGGYQIE
201: KALRCAEEIK SRQMIVQDPK HRHHHHQFAR VLL

Best Arabidopsis Sequence Match ( AT3G60550.1 )
(BLAST)

001: MAVSNSLTIS PRKLRSDLYS YSYQNNSKTP LVISVLSSLI DRTLTRNERI SRRALPSSGA GGKTQIFDCR EIPDMTIQSY LGRIFRYTKA GPSVYVVAYV
101: YIDRFCQTNP GFRISLTNVH RLLITTIMIA SKYVEDLNYR NSYFAKVGGL ETEDLNKLEL EFLFLMGFKL HVNVSVFESY CCHLEREVSF GGGYQIEKAL
201: RCAEEIKSRQ MIIQDPKHHH HHHQLARILL

Arabidopsis Description

CYCU2-2Cyclin-U2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M205]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.