Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45080.1 | GSMUA_Achr11P... | AT3G48750.1 | 15197472 |
| AT3G60550.1 | GSMUA_Achr11P... | AT3G48750.1 | 15197472 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG88936 | Soybean | nucleus | 58.19 | 60.54 |
| Os04t0552300-01 | Rice | cytosol | 56.03 | 59.91 |
| Bra004888.1-P | Field mustard | mitochondrion, plastid | 56.9 | 59.46 |
| CDX74709 | Canola | mitochondrion, plastid | 56.9 | 59.46 |
| PGSC0003DMT400066949 | Potato | nucleus | 56.03 | 59.09 |
| CDY18953 | Canola | mitochondrion, plastid | 56.47 | 59.01 |
| Bra007544.1-P | Field mustard | plastid | 59.05 | 58.8 |
| CDY41156 | Canola | plastid | 59.05 | 58.8 |
| KRH76137 | Soybean | plastid | 56.47 | 58.48 |
| Solyc01g090800.2.1 | Tomato | cytosol | 55.17 | 58.18 |
| Bra003420.1-P | Field mustard | cytosol | 54.74 | 57.73 |
| AT2G45080.1 | Thale cress | cytosol | 54.74 | 57.21 |
| KRH65411 | Soybean | cytosol, nucleus, plastid | 55.17 | 57.14 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 56.47 | 56.96 |
| VIT_15s0021g02680.t01 | Wine grape | plastid | 56.03 | 56.77 |
| Bra000369.1-P | Field mustard | plastid | 54.74 | 56.7 |
| CDX71800 | Canola | plastid | 57.33 | 56.6 |
| CDX95626 | Canola | mitochondrion, plastid | 54.31 | 56.25 |
| CDX83405 | Canola | mitochondrion, plastid | 54.31 | 56.25 |
| CDX67834 | Canola | cytosol | 55.6 | 55.84 |
| CDX98427 | Canola | cytosol | 54.74 | 54.74 |
| Zm00001d002733_P001 | Maize | cytosol | 53.02 | 51.9 |
| TraesCS2A01G413300.1 | Wheat | cytosol | 50.86 | 51.08 |
| TraesCS2B01G432000.1 | Wheat | cytosol | 50.86 | 50.86 |
| TraesCS2D01G411300.1 | Wheat | cytosol | 50.86 | 50.86 |
| EES11236 | Sorghum | cytosol | 51.29 | 50.85 |
| GSMUA_Achr5P12540_001 | Banana | cytosol, nucleus, plastid | 34.05 | 38.35 |
| GSMUA_Achr2P10440_001 | Banana | cytosol | 32.33 | 38.07 |
| GSMUA_Achr1P00510_001 | Banana | nucleus | 31.9 | 36.1 |
| GSMUA_Achr11P... | Banana | mitochondrion | 22.84 | 30.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.88 | 28.03 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like | GO:GO:0000079 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | EnsemblPlantsGene:GSMUA_Achr4G24630_001 | EnsemblPlants:GSMUA_Achr4P24630_001 |
| EnsemblPlants:GSMUA_Achr4T24630_001 | UniProt:M0SRS4 | PFAM:PF08613 | PIRSF:PIRSF027110 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF15 |
| SUPFAM:SSF47954 | UniParc:UPI000294C1E6 | SEG:seg | : | : | : |
Description
Cyclin-U2-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G24630_001]
Coordinates
chr4:+:24350964..24351850
Molecular Weight (calculated)
26174.5 Da
IEP (calculated)
8.105
GRAVY (calculated)
-0.073
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLNPISPS KLRSDLYNFP CDDDESTTTA PPSVISVLAS LLDRAIARND RAAVNRGNAA VGDARSRAFE SHQVLDMTIQ SFLERIYRYA RVAPPVYVVA
101: YVYMDRLCQF NPGLRICSAN AHRLLITTIM VASKFVEDLN YCNSYFAKVG GLSARELNSL ELDFLFLMKF KLHVSVSVFE SYCSHLEREV SFGGGYQIER
201: SLRRLMCGGE ITAKEKERRE PNPVAQGLIY YM
101: YVYMDRLCQF NPGLRICSAN AHRLLITTIM VASKFVEDLN YCNSYFAKVG GLSARELNSL ELDFLFLMKF KLHVSVSVFE SYCSHLEREV SFGGGYQIER
201: SLRRLMCGGE ITAKEKERRE PNPVAQGLIY YM
001: MDSLAISPRK LRSDLYSYSY QDDSNTVPLV ISVLSSLIER TLARNERISR SYGGFGKTRV FDCREIPDMT IQSYLERIFR YTKAGPSVYV VAYVYIDRFC
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML
101: QNNQGFRISL TNVHRLLITT IMIASKYVED MNYKNSYFAK VGGLETEDLN NLELEFLFLM GFKLHVNVSV FESYCCHLER EVSIGGGYQI EKALRCAEEI
201: KSRQIVQDPK HHHHHQFSRI ML
Arabidopsis Description
CYCU2-1Cycp3 [Source:UniProtKB/TrEMBL;Acc:A0A178VTM7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.