Factsheet for VIT_14s0128g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96839	Soybean	nucleus	38.5	46.59
Os05t0398000-01	Rice	cytosol	29.58	45.65
VIT_07s0104g00540.t01	Wine grape	nucleus	47.42	44.69
CDY18769	Canola	nucleus	42.72	42.92
CDY27777	Canola	cytosol	42.72	42.92
AT3G05327.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	42.72	42.92
CDY18791	Canola	nucleus	41.78	41.59
TraesCS1D01G248800.1	Wheat	nucleus	43.66	39.74
PGSC0003DMT400008886	Potato	nucleus	41.78	39.38
Solyc01g098930.2.1	Tomato	cytosol	41.78	39.38
GSMUA_AchrUn_...	Banana	nucleus	43.66	38.91
TraesCS1B01G260000.1	Wheat	nucleus	43.66	38.91
TraesCS1A01G249300.1	Wheat	nucleus	43.19	38.49
VIT_16s0013g00630.t01	Wine grape	plasma membrane	34.74	38.14
Zm00001d038133_P002	Maize	nucleus	40.85	36.86
EES19489	Sorghum	cytosol	40.38	36.29
VIT_15s0021g01280.t01	Wine grape	nucleus	33.8	35.29
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	33.33	34.63
PGSC0003DMT400081162	Potato	cytosol	15.49	33.0
VIT_15s0021g02680.t01	Wine grape	plastid	33.8	31.44
HORVU1Hr1G062210.1	Barley	nucleus, plastid	44.6	31.25
CDY05158	Canola	cytosol, nucleus, peroxisome	38.5	25.79

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100242488	wikigene:100242488	MapMan:13.1.1.1.7	ProteinID:CCB59905	ProteinID:CCB59905.1
InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	UniProt:F6HYZ1	EMBL:FN596501	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EntrezGene:LOC100242488	wikigene:LOC100242488
PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF40	SUPFAM:SSF47954	UniParc:UPI00015C9B1B
ArrayExpress:VIT_14s0128g00410	EnsemblPlantsGene:VIT_14s0128g00410	EnsemblPlants:VIT_14s0128g00410.t01	RefSeq:XP_002280845	RefSeq:XP_002280845.1	:

Description

Cyclin [Source:UniProtKB/TrEMBL;Acc:F6HYZ1]

Coordinates

chr14:-:3054222..3054936

Molecular Weight (calculated)

24174.2 Da

IEP (calculated)

9.356

GRAVY (calculated)

-0.207

Length

213 amino acids

Sequence
(BLAST)

001: METQQPPEDN HEAARIYAAL GLVESRKRAE KPPRALFLIA ASLRRSIRKN EKFIQTSTRK TTPTITDFHS SRAPSLTVQQ YMERIDKYAN CSPSCYVVAF
101: LYINRYLKRV GVRLTSLNVH RLLITAVMLA AKFMDDMFYD NAFYAVIGGL SIKEMNSLEV KLLFDMDFRL HVTVETFRRC CVKLEEEAAS GGNHGVNESQ
201: AASTISGYTC RSI

Best Arabidopsis Sequence Match ( AT3G05327.1 )
(BLAST)

001: METSRNSTNS SLFQWLGLLE DSDQPPDSTP PRVITLLAST LEKMIQKNKK KFHTRHNKAD EITMFHGSKA PSLSIYRYTE RIHRYAQCSP VCFVAAFAYI
101: LRYLQRPEAT STARRLTSLN VHRLLITSLL VAAKFLERQC YNNAYYAKIG GVSTEEMNRL ERTFLVDVDF RLYITTETFE KHCLMLQKET VPCDSRKLRT
201: VLGEIACSCQ AI

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:Q1G3M7]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.