Factsheet for VIT_12s0059g02480.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, nucleus, vacuole, golgi, extracellular

Predictor Summary:

plastid 3
nucleus 3
endoplasmic reticulum 3
plasma membrane 3
vacuole 3
golgi 3
extracellular 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0045g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	VIT_15s0045g00310.t01	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22528	Soybean	nucleus	75.12	66.38
KRH26828	Soybean	cytosol	74.63	65.95
PGSC0003DMT400067297	Potato	cytosol, nucleus	71.71	65.33
CDY38647	Canola	cytosol	63.41	61.9
CDY54190	Canola	cytosol	63.41	61.9
Bra031315.1-P	Field mustard	cytosol	62.44	60.95
CDY55656	Canola	cytosol	28.29	60.42
AT3G21870.1	Thale cress	cytosol	60.98	59.52
Solyc07g052610.2.1	Tomato	cytosol	69.76	59.34
CDY64256	Canola	cytosol	24.88	57.95
GSMUA_Achr11P...	Banana	mitochondrion	48.78	57.8
VIT_07s0104g00540.t01	Wine grape	nucleus	43.9	39.82
VIT_16s0013g00630.t01	Wine grape	plasma membrane	37.56	39.69
VIT_15s0021g01280.t01	Wine grape	nucleus	37.56	37.75
TraesCS2B01G503500.1	Wheat	cytosol	40.49	34.02
TraesCS2A01G479100.1	Wheat	cytosol	40.0	33.61
VIT_14s0128g00410.t01	Wine grape	nucleus	34.63	33.33
HORVU2Hr1G107830.1	Barley	cytosol	39.51	32.79
TraesCS2D01G478400.1	Wheat	cytosol	39.02	32.79
VIT_15s0021g02680.t01	Wine grape	plastid	36.59	32.75
OQU82384	Sorghum	nucleus	32.68	31.46
Os04t0628900-00	Rice	nucleus	40.0	31.06
Zm00001d026360_P001	Maize	cytosol	41.46	30.14

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100261965	wikigene:100261965	MapMan:13.1.1.1.7	ProteinID:CCB52053	ProteinID:CCB52053.1
InterPro:Cyclin-like_sf	InterPro:Cyclin_P/U	InterPro:Cyclin_PHO80-like	UniProt:F6HIK7	EMBL:FN595765	GO:GO:0000079
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019901	EntrezGene:LOC100261965	wikigene:LOC100261965
PFAM:PF08613	PIRSF:PIRSF027110	PANTHER:PTHR15615	PANTHER:PTHR15615:SF0	SUPFAM:SSF47954	UniParc:UPI0002107F88
ArrayExpress:VIT_12s0059g02480	EnsemblPlantsGene:VIT_12s0059g02480	EnsemblPlants:VIT_12s0059g02480.t01	unigene:Vvi.22497	RefSeq:XP_002280596	RefSeq:XP_002280596.1
SEG:seg	:	:	:	:	:

Description

Cyclin [Source:UniProtKB/TrEMBL;Acc:F6HIK7]

Coordinates

chr12:-:7267100..7268362

Molecular Weight (calculated)

22874.8 Da

IEP (calculated)

5.620

GRAVY (calculated)

0.134

Length

205 amino acids

Sequence
(BLAST)

001: MTGVESTTPR VLAVLAFAME RLVARNEGLV GESIGLMGKS LNVFHGVRAP SISIPKYLER IYKYTNCSPS CFVVGYVYID RLVHKHPDSL VISLNVHRLL
101: VTSVMVASKM LDDVHYNNAF YARVGGVSNA ELNRLELELL FMLDFGVVVS SRVFESYCLY LEKEMLWNGA GQRMERAMVP NSVDEVTEIS VDDTQTSSSP
201: PQMVD

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.