Factsheet for Zm00001d026360_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d027373_P003
Zm00001d048497_P002
Zm00001d053930_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	Zm00001d027373_P003	AT3G48750.1	15197472
AT3G21870.1	Zm00001d048497_P002	AT3G48750.1	15197472
AT3G21870.1	Zm00001d053930_P001	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82384	Sorghum	nucleus	59.57	78.87
TraesCS2B01G503500.1	Wheat	cytosol	48.94	56.56
Os04t0628900-00	Rice	nucleus	52.84	56.44
TraesCS2A01G479100.1	Wheat	cytosol	48.58	56.15
TraesCS2D01G478400.1	Wheat	cytosol	48.23	55.74
HORVU2Hr1G107830.1	Barley	cytosol	47.87	54.66
GSMUA_Achr11P...	Banana	mitochondrion	26.6	43.35
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	30.14	41.46
CDY64256	Canola	cytosol	12.77	40.91
CDY55656	Canola	cytosol	13.83	40.62
CDY38647	Canola	cytosol	28.72	38.57
CDY54190	Canola	cytosol	28.72	38.57
PGSC0003DMT400067297	Potato	cytosol, nucleus	30.5	38.22
Bra031315.1-P	Field mustard	cytosol	28.37	38.1
AT3G21870.1	Thale cress	cytosol	28.01	37.62
KRH26828	Soybean	cytosol	28.72	34.91
KRH22528	Soybean	nucleus	28.72	34.91
Solyc07g052610.2.1	Tomato	cytosol	29.79	34.85
Zm00001d029970_P001	Maize	nucleus	26.95	33.63
Zm00001d002788_P001	Maize	cytosol	24.47	33.33
Zm00001d015092_P001	Maize	nucleus	26.95	31.67
Zm00001d017441_P001	Maize	cytosol	23.05	31.1
Zm00001d002733_P001	Maize	cytosol	25.18	29.96
Zm00001d038133_P002	Maize	nucleus	22.7	27.12

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100284747	MapMan:13.1.1.1.7	ProteinID:AQK46373.1	UniProt:B6TX30	InterPro:Cyclin-like_sf
InterPro:Cyclin_PHO80-like	EMBL:EU969545	GO:GO:0000079	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0019901	PFAM:PF08613
PANTHER:PTHR15615	PANTHER:PTHR15615:SF0	SUPFAM:SSF47954	UniParc:UPI000182D432	EnsemblPlantsGene:Zm00001d026360	EnsemblPlants:Zm00001d026360_P001
EnsemblPlants:Zm00001d026360_T001	SEG:seg	:	:	:	:

Description

Cyclin-dependent protein kinase

Coordinates

chr10:+:144211470..144213519

Molecular Weight (calculated)

30472.2 Da

IEP (calculated)

7.393

GRAVY (calculated)

-0.382

Length

282 amino acids

Sequence
(BLAST)

001: MTAVALALPT DDDKDGGRRG VDHSPTAPAP PPPPPPPQEL VMVARAVQRL VARNDAVVPP APDGRGGGRR LGMRAFEAAE GAAAPRIGVP EYLERVHRYA
101: ALDPECYVVA YAYVDMAAHR RPAAAVASRN VHRLLLASLL VASKVLDDFH HSNAFFARVG GVSNAEMNRL ELELLDVLDF AVAVDHRVYR RYREHLEKET
201: TLMMLRRDDG HGPPVPVPGS GAAPTKSRTA ASSVVKPPLT EDRRRPAEAG DADGGGEHDD RRKLPNSATA AASLRELWAF DY

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.