Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38647 | Canola | cytosol | 88.1 | 88.1 |
| CDY54190 | Canola | cytosol | 88.1 | 88.1 |
| Bra031315.1-P | Field mustard | cytosol | 87.14 | 87.14 |
| CDY64256 | Canola | cytosol | 32.38 | 77.27 |
| CDY55656 | Canola | cytosol | 32.86 | 71.88 |
| VIT_12s0059g02480.t01 | Wine grape | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 59.52 | 60.98 |
| PGSC0003DMT400067297 | Potato | cytosol, nucleus | 60.0 | 56.0 |
| KRH22528 | Soybean | nucleus | 61.43 | 55.6 |
| KRH26828 | Soybean | cytosol | 60.95 | 55.17 |
| Solyc07g052610.2.1 | Tomato | cytosol | 61.9 | 53.94 |
| GSMUA_Achr11P... | Banana | mitochondrion | 43.33 | 52.6 |
| AT2G44740.1 | Thale cress | cytosol | 34.76 | 36.14 |
| OQU82384 | Sorghum | nucleus | 33.81 | 33.33 |
| AT3G63120.2 | Thale cress | cytosol | 34.76 | 33.03 |
| AT5G61650.1 | Thale cress | nucleus | 34.29 | 32.88 |
| HORVU2Hr1G107830.1 | Barley | cytosol | 38.1 | 32.39 |
| TraesCS2D01G478400.1 | Wheat | cytosol | 37.62 | 32.38 |
| TraesCS2A01G479100.1 | Wheat | cytosol | 37.62 | 32.38 |
| TraesCS2B01G503500.1 | Wheat | cytosol | 37.62 | 32.38 |
| AT3G05327.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 31.43 | 31.13 |
| AT5G07450.1 | Thale cress | nucleus | 31.9 | 31.02 |
| AT2G45080.1 | Thale cress | cytosol | 32.38 | 30.63 |
| AT3G60550.1 | Thale cress | mitochondrion, nucleus, plastid | 32.86 | 30.0 |
| Os04t0628900-00 | Rice | nucleus | 37.62 | 29.92 |
| Zm00001d026360_P001 | Maize | cytosol | 37.62 | 28.01 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.7 | EntrezGene:821742 | ProteinID:AEE76561.1 | ArrayExpress:AT3G21870 | EnsemblPlantsGene:AT3G21870 |
| RefSeq:AT3G21870 | TAIR:AT3G21870 | RefSeq:AT3G21870-TAIR-G | EnsemblPlants:AT3G21870.1 | TAIR:AT3G21870.1 | ProteinID:BAB02187.1 |
| EMBL:BT014779 | EMBL:BT015746 | Symbol:CYCP2;1 | InterPro:Cyclin-like_sf | InterPro:Cyclin_P/U | InterPro:Cyclin_PHO80-like |
| GO:GO:0000079 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019901 | GO:GO:0051301 |
| RefSeq:NP_188825.1 | PFAM:PF08613 | PIRSF:PIRSF027110 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR15615 | PANTHER:PTHR15615:SF0 | UniProt:Q9LJ45 |
| SUPFAM:SSF47954 | UniParc:UPI00000A1A87 | SEG:seg | : | : | : |
Description
CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
Coordinates
chr3:-:7703799..7704958
Molecular Weight (calculated)
23447.4 Da
IEP (calculated)
6.624
GRAVY (calculated)
0.119
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.