CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11866
KRH36887
KRH42252
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21870.1	KRH11866	AT3G48750.1	15197472
AT3G21870.1	KRH36887	AT3G48750.1	15197472
AT3G21870.1	KRH42252	AT3G48750.1	15197472
AT3G21870.1	KRH58370	AT3G48750.1	15197472

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26828	Soybean	cytosol	94.4	94.4
VIT_12s0059g02480.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	66.38	75.12
CDY64256	Canola	cytosol	25.43	67.05
PGSC0003DMT400067297	Potato	cytosol, nucleus	63.36	65.33
CDY55656	Canola	cytosol	26.72	64.58
Solyc07g052610.2.1	Tomato	cytosol	65.09	62.66
CDY38647	Canola	cytosol	56.03	61.9
CDY54190	Canola	cytosol	56.03	61.9
Bra031315.1-P	Field mustard	cytosol	55.6	61.43
AT3G21870.1	Thale cress	cytosol	55.6	61.43
GSMUA_Achr11P...	Banana	mitochondrion	39.22	52.6
KRH71916	Soybean	cytosol	22.41	52.0
KRG96839	Soybean	nucleus	33.19	43.75
KRH40216	Soybean	nucleus	34.91	43.09
KRH48888	Soybean	nucleus	37.5	43.07
KRH67205	Soybean	nucleus	39.22	41.94
KRH66451	Soybean	cytosol	37.5	41.63
KRH01000	Soybean	nucleus	36.21	40.98
KRG95527	Soybean	nucleus	38.36	36.18
KRG88936	Soybean	nucleus	34.48	35.87
KRH76137	Soybean	plastid	34.48	35.71
KRH65411	Soybean	cytosol, nucleus, plastid	34.05	35.27
KRH07327	Soybean	endoplasmic reticulum, extracellular	22.84	35.1
OQU82384	Sorghum	nucleus	30.6	33.33
TraesCS2B01G503500.1	Wheat	cytosol	34.91	33.2
TraesCS2A01G479100.1	Wheat	cytosol	34.48	32.79
HORVU2Hr1G107830.1	Barley	cytosol	34.05	31.98
TraesCS2D01G478400.1	Wheat	cytosol	33.62	31.97
Os04t0628900-00	Rice	nucleus	34.05	29.92
Zm00001d026360_P001	Maize	cytosol	34.91	28.72

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100527137	MapMan:13.1.1.1.7	EMBL:ACUP02008417	EMBL:BT091958	UniProt:C6T3E7
InterPro:Cyclin-like_sf	InterPro:Cyclin_PHO80-like	EnsemblPlantsGene:GLYMA_13G306600	GO:GO:0000079	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0019901	EnsemblPlants:KRH22528	ProteinID:KRH22528	ProteinID:KRH22528.1	PFAM:PF08613
PANTHER:PTHR15615	PANTHER:PTHR15615:SF0	SUPFAM:SSF47954	UniParc:UPI0001B1545D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:+:40276124..40277786

Molecular Weight (calculated)

26180.7 Da

IEP (calculated)

5.888

GRAVY (calculated)

-0.084

Length

232 amino acids

Sequence
(BLAST)

001: MLTAGEYSNH SWPLQPETSL TELNLPRVLC ILSSMLEKLV ARNEKLVDIL SQQLDGLNCG SVRLGNSLNT FHGVRAPSIS IPKYLERIYK YTNCSPSCFV
101: VGYVYIDRLT HRHPDSLVTS LNVHRLLVTS VMVASKMLDD EHYNNAVYAR VGGVSNTELN KLELELLFLL DFRVMVSSRV FESYCFHLEK EMVINGTGMK
201: IERALTPKAM DDLETEISVE DKQSPSPPQI VD

Best Arabidopsis Sequence Match ( AT3G21870.1 )
(BLAST)

001: MLTAAGDDEL DPVVGPESAT EAATPRVLTI ISHVMEKLVA RNEWLAKQTK GFGKSLEAFH GVRAPSISIA KYLERIYKYT KCSPACFVVG YVYIDRLAHK
101: HPGSLVVSLN VHRLLVTCVM IAAKILDDVH YNNEFYARVG GVSNADLNKM ELELLFLLDF RVTVSFRVFE SYCFHLEKEM QLNDAVSSLK DIQPMQESLS
201: PASTLSSLYV

Arabidopsis Description

CYCU1-1Cyclin-U1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.