Factsheet for TraesCS6B01G387500.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G336900.1	Wheat	cytosol, nucleus, plastid	100.0	100.0
HORVU6Hr1G084640.1	Barley	cytosol, nucleus, plastid	100.0	100.0
TraesCS6A01G354500.1	Wheat	cytosol, nucleus, plastid	100.0	100.0
EES05944	Sorghum	cytosol, nucleus, plastid	87.25	86.41
Zm00001d018363_P001	Maize	mitochondrion	87.25	85.58
Os02t0793700-02	Rice	extracellular	84.31	84.31
GSMUA_Achr6P03970_001	Banana	cytosol	76.47	78.0
KRH61642	Soybean	cytosol	65.69	67.0
PGSC0003DMT400029206	Potato	cytosol	64.71	66.0
PGSC0003DMT400038438	Potato	cytosol	63.73	65.0
VIT_04s0008g06870.t01	Wine grape	cytosol, nucleus, plastid	62.75	64.65
Solyc08g029160.1.1	Tomato	extracellular	62.75	64.0
KRH31695	Soybean	cytosol	49.02	63.29
CDY36148	Canola	nucleus	61.76	63.0
Bra032055.1-P	Field mustard	cytosol	61.76	63.0
KRH52307	Soybean	nucleus	67.65	62.16
AT2G24940.1	Thale cress	nucleus	60.78	62.0
KRH75821	Soybean	cytosol, nucleus, plastid	45.1	54.76
KRH25811	Soybean	mitochondrion	47.06	48.98
TraesCS4B01G177200.1	Wheat	endoplasmic reticulum	59.8	30.81
TraesCS1B01G191000.1	Wheat	golgi	50.98	23.11
TraesCS1B01G191100.2	Wheat	plastid	53.92	22.54
TraesCS6B01G264900.1	Wheat	cytosol, endoplasmic reticulum, nucleus	49.02	16.78
TraesCS4B01G256900.1	Wheat	endoplasmic reticulum	35.29	15.19

Protein Annotations

EnsemblPlants:TraesCS6B01G387500.1	EnsemblPlantsGene:TraesCS6B01G387500	Gene3D:3.10.120.10	InterPro:Cyt_B5-like_heme/steroid-bd	InterPro:Cyt_B5-like_heme/steroid_sf	InterPro:IPR001199
InterPro:IPR036400	PANTHER:PTHR10281	PANTHER:PTHR10281:SF26	PFAM:PF00173	SMART:SM01117	SUPFAM:SSF55856
MapMan:11.3.2.1.4	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:662451987..662452295

Molecular Weight (calculated)

10706.7 Da

IEP (calculated)

6.812

GRAVY (calculated)

-0.074

Length

102 amino acids

Sequence
(BLAST)

001: MATELTAAQL RAYDGTDASK PIYVAIRGKV FDVSAGRGFY GPGGDYALFA GREAARALAK MSKDAADVSG DLSGLSDKEL GVLADWESKF QAKYPVVARL
101: AA

Best Arabidopsis Sequence Match ( AT2G24940.1 )
(BLAST)

1: MEFTAEQLSQ YNGTDESKPI YVAIKGRVFD VTTGKSFYGS GGDYSMFAGK DASRALGKMS KNEEDVSPSL EGLTEKEINT LNDWETKFEA KYPVVGRVVS

Arabidopsis Description

MP3MAPR2 [Source:UniProtKB/TrEMBL;Acc:A0A178VV33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.