Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50891 | Canola | nucleus, plastid | 11.26 | 6.27 |
| Bra020008.1-P | Field mustard | nucleus | 6.57 | 4.64 |
| Bra030788.1-P | Field mustard | nucleus | 0.94 | 0.77 |
| CDY20686 | Canola | nucleus | 0.94 | 0.76 |
| Solyc11g045610.1.1 | Tomato | nucleus | 0.75 | 0.62 |
| PGSC0003DMT400071458 | Potato | nucleus | 0.75 | 0.62 |
| GSMUA_Achr8P08480_001 | Banana | nucleus | 0.38 | 0.3 |
| TraesCS6A01G192900.2 | Wheat | nucleus | 0.38 | 0.28 |
| CDY31076 | Canola | nucleus | 0.19 | 0.16 |
| AT4G10010.2 | Thale cress | nucleus | 0.19 | 0.15 |
| TraesCS3A01G313300.1 | Wheat | cytosol | 0.19 | 0.15 |
| Os08t0112500-01 | Rice | nucleus | 0.0 | 0.0 |
| TraesCS2A01G182800.1 | Wheat | plastid | 0.0 | 0.0 |
| Solyc06g064660.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 0.0 | 0.0 |
| Solyc01g103350.2.1 | Tomato | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400083223 | Potato | cytosol | 0.0 | 0.0 |
| GSMUA_Achr10P... | Banana | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400064016 | Potato | nucleus | 0.0 | 0.0 |
| KRH06043 | Soybean | nucleus | 0.0 | 0.0 |
| KXG24243 | Sorghum | nucleus | 0.0 | 0.0 |
| KRH77684 | Soybean | nucleus | 0.0 | 0.0 |
| HORVU7Hr1G076360.30 | Barley | nucleus | 0.0 | 0.0 |
| KRH27807 | Soybean | nucleus | 0.0 | 0.0 |
| KRH26282 | Soybean | nucleus | 0.0 | 0.0 |
| TraesCS5A01G110100.1 | Wheat | endoplasmic reticulum, plasma membrane | 0.0 | 0.0 |
| Zm00001d049698_P003 | Maize | nucleus | 0.0 | 0.0 |
| Zm00001d035050_P002 | Maize | nucleus | 0.0 | 0.0 |
| VIT_18s0001g06780.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| VIT_12s0035g01180.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| TraesCS7D01G316100.1 | Wheat | nucleus | 0.0 | 0.0 |
| TraesCS7B01G220500.1 | Wheat | nucleus | 0.0 | 0.0 |
| TraesCS7A01G319500.1 | Wheat | nucleus | 0.0 | 0.0 |
| TraesCS5A01G110200.1 | Wheat | plastid | 0.0 | 0.0 |
| TraesCS1A01G243300.1 | Wheat | nucleus | 0.0 | 0.0 |
| TraesCS5A01G075200.1 | Wheat | nucleus | 0.0 | 0.0 |
| TraesCS4A01G227200.2 | Wheat | mitochondrion | 0.0 | 0.0 |
| TraesCS4A01G142300.1 | Wheat | nucleus | 0.0 | 0.0 |
| TraesCS3A01G498200.1 | Wheat | nucleus | 0.0 | 0.0 |
| TraesCS3A01G439200.1 | Wheat | cytosol, plasma membrane, plastid | 0.0 | 0.0 |
| CDY58380 | Canola | nucleus | 0.0 | 0.0 |
| TraesCS2A01G119300.1 | Wheat | nucleus | 0.0 | 0.0 |
| Bra027895.1-P | Field mustard | nucleus | 0.0 | 0.0 |
| CDX93496 | Canola | nucleus | 0.0 | 0.0 |
| CDX86879 | Canola | nucleus | 0.0 | 0.0 |
| CDX72813 | Canola | plastid | 0.0 | 0.0 |
| CDX68307 | Canola | plastid | 0.0 | 0.0 |
| Bra037899.1-P | Field mustard | nucleus | 0.0 | 0.0 |
| Bra035472.1-P | Field mustard | nucleus | 0.0 | 0.0 |
| Bra031674.1-P | Field mustard | nucleus | 0.0 | 0.0 |
| Bra028011.1-P | Field mustard | nucleus | 0.0 | 0.0 |
| CDX93753 | Canola | nucleus | 0.0 | 0.0 |
| Bra016132.1-P | Field mustard | plastid | 0.0 | 0.0 |
| Bra010213.1-P | Field mustard | nucleus | 0.0 | 0.0 |
| Bra007973.1-P | Field mustard | nucleus, plastid | 0.0 | 0.0 |
| Bra003921.1-P | Field mustard | plastid | 0.0 | 0.0 |
| AT1G71530.1 | Thale cress | plastid | 0.0 | 0.0 |
| AT1G57700.1 | Thale cress | nucleus | 0.0 | 0.0 |
| AT1G33770.1 | Thale cress | nucleus | 0.0 | 0.0 |
| CDY29169 | Canola | nucleus | 0.0 | 0.0 |
| CDY70545 | Canola | nucleus | 0.0 | 0.0 |
| CDY67268 | Canola | nucleus, plastid | 0.0 | 0.0 |
| AT1G09600.1 | Thale cress | nucleus | 0.0 | 0.0 |
| CDY53144 | Canola | nucleus | 0.0 | 0.0 |
| CDY48795 | Canola | nucleus | 0.0 | 0.0 |
| CDY39924 | Canola | nucleus | 0.0 | 0.0 |
| CDY36688 | Canola | plastid | 0.0 | 0.0 |
| CDY31800 | Canola | nucleus | 0.0 | 0.0 |
| CDY70577 | Canola | nucleus | 0.0 | 0.0 |
| CDY22631 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY15287 | Canola | nucleus | 0.0 | 0.0 |
| CDY06363 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY03697 | Canola | nucleus, plastid | 0.0 | 0.0 |
| CDX99520 | Canola | nucleus | 0.0 | 0.0 |
| CDX96330 | Canola | plastid | 0.0 | 0.0 |
| CDX94278 | Canola | cytosol, mitochondrion, nucleus, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G319600.1 | EnsemblPlantsGene:TraesCS7A01G319600 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1601 |
| PFAM:PF01535 | PFAM:PF12854 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 | MapMan:35.1 |
Description
No Description!
Coordinates
chr7A:+:460117671..460119272
Molecular Weight (calculated)
59405.1 Da
IEP (calculated)
6.848
GRAVY (calculated)
0.037
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MLALGVDADR YTYPSLLRAC GELGEVTIGR KIDHRIRRSR YDLDMYVWNA LVGMYVKCGE LEDARRVFDE MSVRDVVSWN TMVSGYASAG MWAEAFQLLQ
101: RVPGENIVTW NAVAAGNLKA GNYDEVIRLL SQTRNRHGPG VDSVSVLIGL KACAKSGYLR IGRELHGVAV RLYFDRLECV VNSLITMYSR CRMMSSAVLL
201: FTVYSIRSIT AWNSLLAGFA FMDQVEEASL LFREMIGSGV CPSDVTVLTM LSVVARFGHL CHGRELHCYI LRHGLGGSKL LQNSLVDMYS KSRHMRASRI
301: VFDQMECRDK HAYTSLILGY GMQREGHLSL KLFDEMIANS IEPDHVTMVA VLSACSYSGL VTQGQLLFAN MFAVFGIAPR VEHFSCMVDL YSREGLLKVS
401: EEIIDKMPFQ PTAAMLATLI EACLTHGNTE IGKRTAKKLL AMRTNNPGHY KLISNTYISA KCWPELAKVR SLMSMMDLTM VPSHSLLESE YDICLVEQDD
501: GLNHGAHCDL SDRITDTDSS SSEEVKSSEA FGG
101: RVPGENIVTW NAVAAGNLKA GNYDEVIRLL SQTRNRHGPG VDSVSVLIGL KACAKSGYLR IGRELHGVAV RLYFDRLECV VNSLITMYSR CRMMSSAVLL
201: FTVYSIRSIT AWNSLLAGFA FMDQVEEASL LFREMIGSGV CPSDVTVLTM LSVVARFGHL CHGRELHCYI LRHGLGGSKL LQNSLVDMYS KSRHMRASRI
301: VFDQMECRDK HAYTSLILGY GMQREGHLSL KLFDEMIANS IEPDHVTMVA VLSACSYSGL VTQGQLLFAN MFAVFGIAPR VEHFSCMVDL YSREGLLKVS
401: EEIIDKMPFQ PTAAMLATLI EACLTHGNTE IGKRTAKKLL AMRTNNPGHY KLISNTYISA KCWPELAKVR SLMSMMDLTM VPSHSLLESE YDICLVEQDD
501: GLNHGAHCDL SDRITDTDSS SSEEVKSSEA FGG
001: MMLSCSPLTV PSSSYPFHFL PSSSDPPYDS IRNHPSLSLL HNCKTLQSLR IIHAQMIKIG LHNTNYALSK LIEFCILSPH FEGLPYAISV FKTIQEPNLL
101: IWNTMFRGHA LSSDPVSALK LYVCMISLGL LPNSYTFPFV LKSCAKSKAF KEGQQIHGHV LKLGCDLDLY VHTSLISMYV QNGRLEDAHK VFDKSPHRDV
201: VSYTALIKGY ASRGYIENAQ KLFDEIPVKD VVSWNAMISG YAETGNYKEA LELFKDMMKT NVRPDESTMV TVVSACAQSG SIELGRQVHL WIDDHGFGSN
301: LKIVNALIDL YSKCGELETA CGLFERLPYK DVISWNTLIG GYTHMNLYKE ALLLFQEMLR SGETPNDVTM LSILPACAHL GAIDIGRWIH VYIDKRLKGV
401: TNASSLRTSL IDMYAKCGDI EAAHQVFNSI LHKSLSSWNA MIFGFAMHGR ADASFDLFSR MRKIGIQPDD ITFVGLLSAC SHSGMLDLGR HIFRTMTQDY
501: KMTPKLEHYG CMIDLLGHSG LFKEAEEMIN MMEMEPDGVI WCSLLKACKM HGNVELGESF AENLIKIEPE NPGSYVLLSN IYASAGRWNE VAKTRALLND
601: KGMKKVPGCS SIEIDSVVHE FIIGDKFHPR NREIYGMLEE MEVLLEKAGF VPDTSEVLQE MEEEWKEGAL RHHSEKLAIA FGLISTKPGT KLTIVKNLRV
701: CRNCHEATKL ISKIYKREII ARDRTRFHHF RDGVCSCNDY W
101: IWNTMFRGHA LSSDPVSALK LYVCMISLGL LPNSYTFPFV LKSCAKSKAF KEGQQIHGHV LKLGCDLDLY VHTSLISMYV QNGRLEDAHK VFDKSPHRDV
201: VSYTALIKGY ASRGYIENAQ KLFDEIPVKD VVSWNAMISG YAETGNYKEA LELFKDMMKT NVRPDESTMV TVVSACAQSG SIELGRQVHL WIDDHGFGSN
301: LKIVNALIDL YSKCGELETA CGLFERLPYK DVISWNTLIG GYTHMNLYKE ALLLFQEMLR SGETPNDVTM LSILPACAHL GAIDIGRWIH VYIDKRLKGV
401: TNASSLRTSL IDMYAKCGDI EAAHQVFNSI LHKSLSSWNA MIFGFAMHGR ADASFDLFSR MRKIGIQPDD ITFVGLLSAC SHSGMLDLGR HIFRTMTQDY
501: KMTPKLEHYG CMIDLLGHSG LFKEAEEMIN MMEMEPDGVI WCSLLKACKM HGNVELGESF AENLIKIEPE NPGSYVLLSN IYASAGRWNE VAKTRALLND
601: KGMKKVPGCS SIEIDSVVHE FIIGDKFHPR NREIYGMLEE MEVLLEKAGF VPDTSEVLQE MEEEWKEGAL RHHSEKLAIA FGLISTKPGT KLTIVKNLRV
701: CRNCHEATKL ISKIYKREII ARDRTRFHHF RDGVCSCNDY W
Arabidopsis Description
PCMP-H12Pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LN01]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.