Factsheet for TraesCSU01G196800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G389700.1	Wheat	cytosol	23.92	58.94
TraesCSU01G235500.1	Wheat	cytosol	35.34	57.54
HORVU0Hr1G017790.1	Barley	endoplasmic reticulum, golgi	59.88	55.75
TraesCSU01G232800.1	Wheat	cytosol	55.25	55.33
TraesCSU01G204500.1	Wheat	cytosol, mitochondrion, plastid	47.99	50.32
TraesCSU01G208400.1	Wheat	cytosol	20.83	50.0
TraesCSU01G203600.1	Wheat	cytosol	45.06	49.16
TraesCSU01G168100.1	Wheat	cytosol	44.91	48.66
TraesCSU01G179000.1	Wheat	plasma membrane	49.69	48.2
TraesCSU01G168400.1	Wheat	cytosol	51.39	46.06
TraesCSU01G082800.1	Wheat	cytosol	65.12	45.47
TraesCS7D01G086700.2	Wheat	cytosol	64.35	44.79
TraesCSU01G082900.1	Wheat	mitochondrion	49.38	44.32
TraesCS6B01G464500.1	Wheat	cytosol	42.75	42.88
TraesCSU01G071100.1	Wheat	endoplasmic reticulum, plasma membrane	61.11	42.76
TraesCSU01G083900.1	Wheat	cytosol	50.77	40.92
TraesCS4A01G389600.1	Wheat	cytosol	39.04	38.69
TraesCSU01G081600.1	Wheat	cytosol	52.62	36.39
TraesCSU01G171700.1	Wheat	cytosol	52.62	36.39
TraesCSU01G165600.1	Wheat	cytosol	51.39	35.77
TraesCSU01G071000.1	Wheat	endoplasmic reticulum, golgi, plastid	36.27	34.81
Os08t0372700-00	Rice	nucleus	47.84	34.1
Os08t0373000-00	Rice	cytosol, endoplasmic reticulum	47.07	33.19
TraesCSU01G071200.1	Wheat	cytosol	28.86	30.21
Zm00001d007688_P002	Maize	cytosol	18.67	28.88
TraesCSU01G172000.1	Wheat	cytosol	35.8	24.22
TraesCSU01G000800.1	Wheat	cytosol	35.8	23.75
TraesCSU01G135400.1	Wheat	cytosol	33.64	23.47
KXG21363	Sorghum	cytosol	39.04	21.51

Protein Annotations

EnsemblPlants:TraesCSU01G196800.1	EnsemblPlantsGene:TraesCSU01G196800	Gene3D:3.40.50.300	Gene3D:3.80.10.10	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:NB-ARC	InterPro:P-loop_NTPase
PANTHER:PTHR43889	PANTHER:PTHR43889:SF9	PFAM:PF00931	SEG:seg	SUPFAM:SSF52058	SUPFAM:SSF52540
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:294373659..294375605

Molecular Weight (calculated)

73111.8 Da

IEP (calculated)

6.582

GRAVY (calculated)

-0.032

Length

648 amino acids

Sequence
(BLAST)

001: MYRYFVVVDD IWNVEAWDII KFAFPMTSSG SIIITTTRIN EVAKSCCSSF SGNIYDIKPL NSVHSGELFH RRLFDSEDNC PPHLEEVSNQ ILEKCAGLPL
101: AIIAISGLLA NTRRTEDQWS KVKDSIGRAL ERNHDVEVMM KILSLSYIDL TAHLKTCLLY ISIFPEDSSI HRINLIRDWI GEGFIPKEEG LTIHETGERC
201: FNELLNRGLI LPGETNEYGE VRYCRVHDVI LDFIKSKSIQ ENFVTFLSIS NPKAGTESIH RLSLQGGKQE NSTIPTAGLD LSHVRSVYGA SVEMPSLEKF
301: RHLRVLHLIH YVRYSEQNLE NLVRLFQLSY LNLRHVGIRE LPKQIGRLGC LEVLDLRENP VKELPASIVN LRKLSHLLVE YGVKCPDGVA KMEALEALKE
401: VGVSIQSLDF VSGLGQLKNL SNLALDSNTN DTIEAAEERN RAIVSSLCEL GTQNLQSLTI RDGRGLLQVH LCELTLEKLV NFFLAIPQIP KWASSLRNLQ
501: KLILEVKGVK QDDICMLGAL PSLLILHLKE QTMSNELRIS GEVGFLSLKI FIYDAKYHTV DHMFAARSMP KLEKLVLICH VAEADSLDFG MENLRCLSTI
601: RCEANGDRGI VQAAKTVMER AVSTHPNHPN LLFLRVDKYV WSLIPSFD

Best Arabidopsis Sequence Match ( AT3G07040.1 )
(BLAST)

001: MASATVDFGI GRILSVLENE TLLLSGVHGE IDKMKKELLI MKSFLEDTHK HGGNGSTTTT TQLFQTFVAN TRDLAYQIED ILDEFGYHIH GYRSCAKIWR
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS

Arabidopsis Description

RPM1Disease resistance protein RPM1 [Source:UniProtKB/Swiss-Prot;Acc:Q39214]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.