Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011484 | Potato | nucleus | 39.74 | 46.27 |
| KRH68834 | Soybean | nucleus | 44.87 | 45.45 |
| Solyc04g050790.2.1 | Tomato | cytosol | 38.46 | 44.78 |
| KRG97084 | Soybean | nucleus | 50.0 | 43.58 |
| VIT_00s0333g00060.t01 | Wine grape | cytosol | 28.85 | 35.16 |
| CDY02635 | Canola | nucleus | 36.54 | 34.13 |
| KRG92592 | Soybean | cytosol | 30.77 | 34.04 |
| Bra002152.1-P | Field mustard | nucleus | 35.9 | 33.94 |
| CDY66670 | Canola | nucleus | 35.26 | 33.54 |
| CDY38505 | Canola | nucleus | 35.26 | 33.33 |
| CDY53249 | Canola | nucleus | 37.82 | 32.96 |
| AT5G18310.2 | Thale cress | nucleus | 32.69 | 30.54 |
| KRH34193 | Soybean | cytosol, extracellular, plastid | 31.41 | 27.22 |
Protein Annotations
| EntrezGene:100262060 | wikigene:100262060 | MapMan:35.2 | ProteinID:CBI28671 | ProteinID:CBI28671.3 | UniProt:D7TDU8 |
| EMBL:FN595763 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | EntrezGene:LOC100262060 |
| wikigene:LOC100262060 | PANTHER:PTHR33699 | PANTHER:PTHR33699:SF3 | TIGR:TC56295 | UniParc:UPI00019830C8 | ArrayExpress:VIT_04s0043g00850 |
| EnsemblPlantsGene:VIT_04s0043g00850 | EnsemblPlants:VIT_04s0043g00850.t01 | unigene:Vvi.15971 | RefSeq:XP_002271039 | RefSeq:XP_002271039.1 | SEG:seg |
Description
No Description!
Coordinates
chr4:-:15225713..15228201
Molecular Weight (calculated)
17389.8 Da
IEP (calculated)
10.280
GRAVY (calculated)
-0.815
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVCKRSGQI PAFGNWDYAN DLPITQYFES ARQAGLIRFS SASGECDPSF ASAPHPNRRP PPLHFQKENG RERRCSCAKE QKKQGRVCDV VAAPPRKQAS
101: AKQRSKQQPP APTKAARPPK AVDEDLYKIP PDLLHSSKRK KMWGIFPSCL VPTCMA
101: AKQRSKQQPP APTKAARPPK AVDEDLYKIP PDLLHSSKRK KMWGIFPSCL VPTCMA
001: MAHGRYDTYK KKSGQIPRFG EWEEANEMPI TQYFENPRQA GLIRHQYTTT SSASSTTTSS SSSSSSSAEA LKLASHHPRP RHLHAQRQTA GTKEKRGPQR
101: RVRDVSAQSD KYYIDVNGVK QFKNDVALTC KPPKPVDEDL YKIPPEFIHS STRKRRPSFL ACLVPCA
101: RVRDVSAQSD KYYIDVNGVK QFKNDVALTC KPPKPVDEDL YKIPPEFIHS STRKRRPSFL ACLVPCA
Arabidopsis Description
AT5G18310 protein [Source:UniProtKB/TrEMBL;Acc:B9DGJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.