Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38505 | Canola | nucleus | 98.17 | 97.58 |
| Bra002152.1-P | Field mustard | nucleus | 84.76 | 84.24 |
| CDY53249 | Canola | nucleus | 77.44 | 70.95 |
| CDY02635 | Canola | nucleus | 69.51 | 68.26 |
| AT5G18310.2 | Thale cress | nucleus | 67.68 | 66.47 |
| PGSC0003DMT400011484 | Potato | nucleus | 32.32 | 39.55 |
| Solyc04g050790.2.1 | Tomato | cytosol | 31.71 | 38.81 |
| VIT_04s0043g00850.t01 | Wine grape | nucleus | 33.54 | 35.26 |
| KRH68834 | Soybean | nucleus | 30.49 | 32.47 |
| KRG97084 | Soybean | nucleus | 34.76 | 31.84 |
| KRG92592 | Soybean | cytosol | 25.61 | 29.79 |
| CDY00054 | Canola | cytosol | 23.17 | 23.6 |
| CDY48761 | Canola | cytosol | 23.17 | 23.17 |
| CDY68652 | Canola | cytosol | 22.56 | 22.7 |
| CDY19944 | Canola | cytosol | 23.78 | 21.91 |
| KRH34193 | Soybean | cytosol, extracellular, plastid | 23.78 | 21.67 |
| CDX85342 | Canola | cytosol | 20.73 | 20.99 |
| CDX86302 | Canola | cytosol | 20.73 | 20.86 |
Protein Annotations
| EnsemblPlants:CDY66670 | EnsemblPlantsGene:GSBRNA2T00055541001 | PANTHER:PTHR33699 | PANTHER:PTHR33699:SF3 | ProteinID:CDY66670 | ProteinID:CDY66670.1 |
| SEG:seg | UniParc:UPI0004EC6F5A | UniProt:A0A078JJQ0 | MapMan:35.2 | : | : |
Description
BnaC09g54310DBnaC09g54310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJQ0]
Coordinates
chrLK035399:-:1546..3075
Molecular Weight (calculated)
18540.6 Da
IEP (calculated)
10.445
GRAVY (calculated)
-1.026
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHGRYDNNY RKKSGQIPRF GDWEDANEMP ITQYFENARQ AGLLRHHHNF TTSSSSTATS SSSSSSAEAL KLASHHPRPR HLHHSRQTAG TKEKRGPQRR
101: VRDVSSQTDK YYVDVTGVKH DVAPASRPPK PVDEDLYKIP PELIYSSRRK RRSGFLACLV PCAS
101: VRDVSSQTDK YYVDVTGVKH DVAPASRPPK PVDEDLYKIP PELIYSSRRK RRSGFLACLV PCAS
001: MAHGRYDTYK KKSGQIPRFG EWEEANEMPI TQYFENPRQA GLIRHQYTTT SSASSTTTSS SSSSSSSAEA LKLASHHPRP RHLHAQRQTA GTKEKRGPQR
101: RVRDVSAQSD KYYIDVNGVK QFKNDVALTC KPPKPVDEDL YKIPPEFIHS STRKRRPSFL ACLVPCA
101: RVRDVSAQSD KYYIDVNGVK QFKNDVALTC KPPKPVDEDL YKIPPEFIHS STRKRRPSFL ACLVPCA
Arabidopsis Description
AT5G18310 protein [Source:UniProtKB/TrEMBL;Acc:B9DGJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.