Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66670 | Canola | nucleus | 97.58 | 98.17 |
| Bra002152.1-P | Field mustard | nucleus | 84.85 | 84.85 |
| CDY53249 | Canola | nucleus | 76.36 | 70.39 |
| CDY02635 | Canola | nucleus | 68.48 | 67.66 |
| AT5G18310.2 | Thale cress | nucleus | 65.45 | 64.67 |
| PGSC0003DMT400011484 | Potato | nucleus | 32.12 | 39.55 |
| Solyc04g050790.2.1 | Tomato | cytosol | 31.52 | 38.81 |
| VIT_04s0043g00850.t01 | Wine grape | nucleus | 33.33 | 35.26 |
| KRH68834 | Soybean | nucleus | 30.3 | 32.47 |
| KRG97084 | Soybean | nucleus | 34.55 | 31.84 |
| KRG92592 | Soybean | cytosol | 25.45 | 29.79 |
| CDY48761 | Canola | cytosol | 23.03 | 23.17 |
| CDY00054 | Canola | cytosol | 22.42 | 22.98 |
| CDY68652 | Canola | cytosol | 22.42 | 22.7 |
| KRH34193 | Soybean | cytosol, extracellular, plastid | 24.24 | 22.22 |
| CDY19944 | Canola | cytosol | 23.64 | 21.91 |
| CDX85342 | Canola | cytosol | 20.0 | 20.37 |
| CDX86302 | Canola | cytosol | 20.0 | 20.25 |
Protein Annotations
| EnsemblPlants:CDY38505 | EnsemblPlantsGene:GSBRNA2T00065960001 | PANTHER:PTHR33699 | PANTHER:PTHR33699:SF3 | ProteinID:CDY38505 | ProteinID:CDY38505.1 |
| SEG:seg | UniParc:UPI0004EEDB8C | UniProt:A0A078HJ67 | MapMan:35.2 | : | : |
Description
BnaA10g16530DBnaA10g16530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJ67]
Coordinates
chrLK032424:+:329614..331198
Molecular Weight (calculated)
18687.8 Da
IEP (calculated)
10.520
GRAVY (calculated)
-1.029
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MINKGRYDNN YRKKSGQIPR FGDWEDANEM PITQYFENAR QAGLLRHHHN FTTSSSSTAT SSSSSSSAEA LKLASHHPRP RHLHHSRQTA GTKEKRGPQR
101: RVRDVSSQTD KYYVDVTGVK HDVAPASRPP KPVDEDLYKI PPELIYSSRR KRRSGFLACL VPCAS
101: RVRDVSSQTD KYYVDVTGVK HDVAPASRPP KPVDEDLYKI PPELIYSSRR KRRSGFLACL VPCAS
001: MAHGRYDTYK KKSGQIPRFG EWEEANEMPI TQYFENPRQA GLIRHQYTTT SSASSTTTSS SSSSSSSAEA LKLASHHPRP RHLHAQRQTA GTKEKRGPQR
101: RVRDVSAQSD KYYIDVNGVK QFKNDVALTC KPPKPVDEDL YKIPPEFIHS STRKRRPSFL ACLVPCA
101: RVRDVSAQSD KYYIDVNGVK QFKNDVALTC KPPKPVDEDL YKIPPEFIHS STRKRRPSFL ACLVPCA
Arabidopsis Description
AT5G18310 protein [Source:UniProtKB/TrEMBL;Acc:B9DGJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.