Factsheet for VIT_10s0003g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
plastid 3
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g02330.t01	Wine grape	plastid	99.16	99.16
VIT_10s0003g02360.t01	Wine grape	cytosol	83.84	99.01
VIT_10s0003g02350.t01	Wine grape	cytosol	79.67	95.02
VIT_10s0003g02340.t01	Wine grape	cytosol	80.5	94.14
VIT_10s0003g02400.t01	Wine grape	cytosol	79.94	93.49
VIT_10s0003g02380.t01	Wine grape	cytosol	59.33	93.42
VIT_10s0003g02390.t01	Wine grape	cytosol	94.15	93.37
VIT_10s0003g02300.t01	Wine grape	cytosol	93.87	93.09
VIT_10s0003g02280.t01	Wine grape	cytosol	71.03	83.06
VIT_10s0003g02260.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	41.5	79.68
VIT_16s0022g00420.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	73.26	71.66
VIT_16s0022g00430.t01	Wine grape	plastid	74.09	69.09
KRH11118	Soybean	cytosol, nucleus, peroxisome, plastid	63.51	61.29
KRH58593	Soybean	cytosol, peroxisome, plastid	60.45	59.78
PGSC0003DMT400059406	Potato	peroxisome	39.83	58.61
KRH21128	Soybean	cytosol	44.85	58.55
VIT_10s0003g02420.t01	Wine grape	cytosol	22.56	57.45
VIT_10s0003g02470.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	33.43	56.07
VIT_15s0021g00950.t01	Wine grape	cytosol	53.2	54.89
VIT_15s0021g00960.t01	Wine grape	cytosol	54.87	54.12
VIT_10s0003g02450.t01	Wine grape	cytosol	52.09	51.09
VIT_10s0003g02320.t01	Wine grape	cytosol, golgi, peroxisome	62.95	50.67
VIT_02s0012g00440.t01	Wine grape	extracellular	16.71	45.8
VIT_02s0012g00450.t01	Wine grape	cytosol, nucleus, peroxisome	44.01	44.76
VIT_02s0012g00320.t01	Wine grape	cytosol	33.15	43.59
VIT_02s0012g00390.t01	Wine grape	cytosol	42.62	43.34
VIT_02s0012g00360.t01	Wine grape	cytosol	39.83	42.56
VIT_02s0012g00400.t01	Wine grape	cytosol, peroxisome, plastid	39.83	41.33
VIT_02s0012g00380.t01	Wine grape	cytosol	29.53	39.7
VIT_11s0118g00400.t01	Wine grape	peroxisome	29.53	38.69
VIT_02s0012g00350.t01	Wine grape	cytosol	36.77	38.15
VIT_05s0020g01310.t01	Wine grape	cytosol	38.44	37.81
VIT_11s0118g00370.t01	Wine grape	plastid	33.7	37.58
VIT_11s0118g00390.t01	Wine grape	cytosol, nucleus, peroxisome	37.05	37.36
VIT_13s0019g02010.t01	Wine grape	cytosol	37.88	37.06
VIT_10s0003g02430.t01	Wine grape	cytosol, nucleus, peroxisome	50.14	36.59
VIT_09s0002g08090.t01	Wine grape	cytosol, nucleus, peroxisome	35.65	36.36
VIT_02s0012g00410.t01	Wine grape	plastid	33.7	34.97
VIT_03s0091g01080.t01	Wine grape	cytosol	35.38	34.23
VIT_11s0118g00360.t01	Wine grape	cytosol	36.77	33.17
VIT_08s0007g00750.t01	Wine grape	cytosol, nucleus, peroxisome	35.93	18.4

Protein Annotations

EntrezGene:100245262	wikigene:100245262	EntrezGene:100260522	wikigene:100260522	Gene3D:2.60.120.330	MapMan:50.1.13
ProteinID:CCB55740	ProteinID:CCB55740.1	InterPro:DIOX_N	UniProt:F6HMF1	EMBL:FN595992	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872
GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	EntrezGene:LOC100245262	wikigene:LOC100245262
EntrezGene:LOC100260522	wikigene:LOC100260522	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226	PFscan:PS51471
PANTHER:PTHR10209	PANTHER:PTHR10209:SF370	SUPFAM:SSF51197	UniParc:UPI00015CC5CD	ArrayExpress:VIT_10s0003g02290	EnsemblPlantsGene:VIT_10s0003g02290
EnsemblPlants:VIT_10s0003g02290.t01	unigene:Vvi.18790	RefSeq:XP_002270036	RefSeq:XP_002270036.1	RefSeq:XP_002270514	RefSeq:XP_002270514.1

Description

No Description!

Coordinates

chr10:+:4121661..4123658

Molecular Weight (calculated)

40395.2 Da

IEP (calculated)

5.699

GRAVY (calculated)

-0.230

Length

359 amino acids

Sequence
(BLAST)

001: MASTQFSSIR AAPVQSVQEL IKEPIPAVPQ PFILDDPQPP ILSASTPLPQ LPTIDMKHLI MSETAGSELE KLHSTCKEWG FFQLVNHGVS SSFMEKLKSE
101: IGEFYKLPLE ERMKYKMRPG DVEGYGLSPI RSEDQKLDWG DRFYMTTNPI HTRKPYLLPE LPPALRDSLE CYLAELQKLA MMLLGFMAKA LKLEKGEMEE
201: LFDDGMQSVR MTYYPPCPQP ELVMGLTPHS DATGITILLQ INGVDGLQIK KDGVWIPVSF LPDALVVNVG DILEILSNGV YTSIEHRATV NAAKERISIA
301: MFFNPKSSAQ IKPAASLINP QNPPLFKQVG MEKYFKDFFS RKLDGKSYLE HMKIKNEEA

Best Arabidopsis Sequence Match ( AT1G17020.1 )
(BLAST)

001: MEAKGAAQWS SILVPSVQEM VKEKTITTVP PRYVRSDQDK TEVDDDFDVK IEIPIIDMKR LCSSTTMDSE VEKLDFACKE WGFFQLVNHG IDSSFLDKVK
101: SEIQDFFNLP MEEKKKFWQR PDEIEGFGQA FVVSEDQKLD WADLFFHTVQ PVELRKPHLF PKLPLPFRDT LEMYSSEVQS VAKILIAKMA RALEIKPEEL
201: EKLFDDVDSV QSMRMNYYPP CPQPDQVIGL TPHSDSVGLT VLMQVNDVEG LQIKKDGKWV PVKPLPNAFI VNIGDVLEII TNGTYRSIEH RGVVNSEKER
301: LSIATFHNVG MYKEVGPAKS LVERQKVARF KRLTMKEYND GLFSRTLDGK AYLDALRI

Arabidopsis Description

SRG1Protein SRG1 [Source:UniProtKB/Swiss-Prot;Acc:Q39224]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.