Factsheet for VIT_10s0003g02430.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g02420.t01	Wine grape	cytosol	23.78	82.98
Solyc02g071500.2.1	Tomato	cytosol	49.59	68.93
Solyc02g071440.2.1	Tomato	cytosol	46.34	65.14
Solyc02g071470.2.1	Tomato	cytosol	46.75	63.89
Solyc02g071410.2.1	Tomato	cytosol	46.34	63.33
PGSC0003DMT400018673	Potato	cytosol	35.98	63.21
Solyc02g071450.2.1	Tomato	cytosol	44.92	61.39
PGSC0003DMT400018663	Potato	cytosol	43.9	59.83
Solyc02g071480.2.1	Tomato	cytosol, nucleus, peroxisome	41.46	59.65
Solyc02g071490.2.1	Tomato	cytosol	43.5	59.28
VIT_15s0021g00960.t01	Wine grape	cytosol	43.09	58.24
VIT_15s0021g00950.t01	Wine grape	cytosol	40.85	57.76
VIT_10s0003g02450.t01	Wine grape	cytosol	42.07	56.56
VIT_10s0003g02260.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	21.34	56.15
PGSC0003DMT400018670	Potato	cytosol	39.43	55.59
VIT_10s0003g02350.t01	Wine grape	cytosol	33.94	55.48
VIT_10s0003g02470.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	23.58	54.21
VIT_10s0003g02340.t01	Wine grape	cytosol	33.74	54.07
VIT_10s0003g02360.t01	Wine grape	cytosol	33.33	53.95
VIT_10s0003g02400.t01	Wine grape	cytosol	33.54	53.75
VIT_10s0003g02280.t01	Wine grape	cytosol	32.52	52.12
VIT_10s0003g02380.t01	Wine grape	cytosol	23.98	51.75
VIT_10s0003g02290.t01	Wine grape	plastid	36.59	50.14
VIT_10s0003g02300.t01	Wine grape	cytosol	36.79	50.0
VIT_10s0003g02330.t01	Wine grape	plastid	36.38	49.86
VIT_10s0003g02390.t01	Wine grape	cytosol	36.18	49.17
VIT_16s0022g00420.t01	Wine grape	cytosol, nucleus, peroxisome, plastid	36.18	48.5
VIT_16s0022g00430.t01	Wine grape	plastid	36.59	46.75
VIT_02s0012g00320.t01	Wine grape	cytosol	24.39	43.96
VIT_02s0012g00440.t01	Wine grape	extracellular	11.59	43.51
VIT_02s0012g00390.t01	Wine grape	cytosol	30.89	43.06
VIT_02s0012g00450.t01	Wine grape	cytosol, nucleus, peroxisome	29.88	41.64
VIT_02s0012g00400.t01	Wine grape	cytosol, peroxisome, plastid	29.27	41.62
VIT_02s0012g00350.t01	Wine grape	cytosol	27.85	39.6
VIT_13s0019g02010.t01	Wine grape	cytosol	28.86	38.69
VIT_05s0020g01310.t01	Wine grape	cytosol	28.25	38.08
VIT_02s0012g00360.t01	Wine grape	cytosol	25.81	37.8
VIT_02s0012g00380.t01	Wine grape	cytosol	19.11	35.21
VIT_11s0118g00400.t01	Wine grape	peroxisome	19.51	35.04
VIT_11s0118g00370.t01	Wine grape	plastid	22.76	34.78
VIT_02s0012g00410.t01	Wine grape	plastid	23.78	33.81
VIT_09s0002g08090.t01	Wine grape	cytosol, nucleus, peroxisome	24.19	33.81
VIT_11s0118g00390.t01	Wine grape	cytosol, nucleus, peroxisome	24.19	33.43
VIT_10s0003g02320.t01	Wine grape	cytosol, golgi, peroxisome	27.44	30.27
VIT_11s0118g00360.t01	Wine grape	cytosol	24.39	30.15
VIT_03s0091g01080.t01	Wine grape	cytosol	21.95	29.11
VIT_08s0007g00750.t01	Wine grape	cytosol, nucleus, peroxisome	29.07	20.4

Protein Annotations

EntrezGene:100257300	wikigene:100257300	Gene3D:2.60.120.330	MapMan:50.1.13	ProteinID:CBI30795	ProteinID:CBI30795.3
UniProt:D7TJX3	InterPro:DIOX_N	EMBL:FN595992	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	EntrezGene:LOC100257300	wikigene:LOC100257300	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171
PFAM:PF14226	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF130	SUPFAM:SSF51197	UniParc:UPI0001BE390D
ArrayExpress:VIT_10s0003g02430	EnsemblPlantsGene:VIT_10s0003g02430	EnsemblPlants:VIT_10s0003g02430.t01	unigene:Vvi.25251	RefSeq:XP_002268794	RefSeq:XP_002268794.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:4361857..4373926

Molecular Weight (calculated)

55588.4 Da

IEP (calculated)

6.070

GRAVY (calculated)

-0.399

Length

492 amino acids

Sequence
(BLAST)

001: MLDYMTGMYK QPGAAPACER RYIFVYGNWT HPCKGEFGNE QGGASTRTCH EQACMNHSSC SFLPETPGTS CQSSETSEGP SGDDGRRKRT TGENLFKDEK
101: QASVWLLCLS VPYNRTRGIC TPVMETESHQ VVFGKSIIVP SVRELVKEPI TKVPPRYVHN QQDLQMAAAA AAAADIWLQS VPVIDLHCLL HGDSMGSELE
201: RLHSACKDWG FFQVVNHGVS SSLLEEFKGE VQDFFELPLE EKKKLWQQPD NHEGFGQLFV VSEEQRLDWS DMFYLTTLPF NLRKSDIFQK LPQKLRETLE
301: AYSVEMKKLA MTILSQMTKA LKMKAEEIRD MFSDGVQSMR MNYYPPCPEP DMTIGFAPHS DADALTILFQ LNDTEGLQIR KEGRWVPVKP LPNAFVVNIG
401: DIMEIVSNGI YQSIEHRAMV NSAKKRLSVA TFFSSNLDSE LGPAPSLISP QNPAIFQRVP IEKYFKDFFA RRLDGKSYLK FMKIDEDGGH TS

Best Arabidopsis Sequence Match ( AT1G17020.1 )
(BLAST)

001: MEAKGAAQWS SILVPSVQEM VKEKTITTVP PRYVRSDQDK TEVDDDFDVK IEIPIIDMKR LCSSTTMDSE VEKLDFACKE WGFFQLVNHG IDSSFLDKVK
101: SEIQDFFNLP MEEKKKFWQR PDEIEGFGQA FVVSEDQKLD WADLFFHTVQ PVELRKPHLF PKLPLPFRDT LEMYSSEVQS VAKILIAKMA RALEIKPEEL
201: EKLFDDVDSV QSMRMNYYPP CPQPDQVIGL TPHSDSVGLT VLMQVNDVEG LQIKKDGKWV PVKPLPNAFI VNIGDVLEII TNGTYRSIEH RGVVNSEKER
301: LSIATFHNVG MYKEVGPAKS LVERQKVARF KRLTMKEYND GLFSRTLDGK AYLDALRI

Arabidopsis Description

SRG1Protein SRG1 [Source:UniProtKB/Swiss-Prot;Acc:Q39224]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.