Factsheet for VIT_18s0001g14890.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P02630_001	Banana	nucleus	11.68	53.19
VIT_00s0349g00050.t01	Wine grape	nucleus	43.93	51.93
GSMUA_Achr9P21040_001	Banana	nucleus	35.98	39.69
GSMUA_Achr4P05090_001	Banana	nucleus	30.84	38.37
GSMUA_Achr1P02640_001	Banana	nucleus	26.17	37.58
GSMUA_Achr5P11470_001	Banana	nucleus	34.58	35.58
GSMUA_Achr4P29580_001	Banana	nucleus	29.44	32.47
GSMUA_Achr2P03490_001	Banana	nucleus	30.84	32.35
GSMUA_Achr2P11200_001	Banana	nucleus	35.05	30.74
GSMUA_Achr9P24090_001	Banana	nucleus	24.3	29.38
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	35.98	29.28
GSMUA_Achr5P17850_001	Banana	nucleus	32.24	28.51

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100266063	wikigene:100266063	MapMan:15.5.4.1	ProteinID:CCB46070	ProteinID:CCB46070.1
ncoils:Coil	UniProt:F6GZT3	EMBL:FN595227	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
EntrezGene:LOC100266063	wikigene:LOC100266063	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF211	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000210A34A	ArrayExpress:VIT_18s0001g14890	EnsemblPlantsGene:VIT_18s0001g14890
EnsemblPlants:VIT_18s0001g14890.t01	RefSeq:XP_002279268	RefSeq:XP_002279268.1	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chr18:-:12936974..12937903

Molecular Weight (calculated)

23895.0 Da

IEP (calculated)

9.887

GRAVY (calculated)

-0.756

Length

214 amino acids

Sequence
(BLAST)

001: MDEVWKDLSL SSLHHHSIST VNNATTNTHH AFRSTLLQDF LARPSNMDPL RTGTSTADPS SAGAATPFAS PLPPPPTLLS LNSLPDFHCI DDTDPMKPHS
101: HLHNNATAAT PYLYPPFNVL AAASPEYPSF RKKRPRGSDD NSGDRRHKRL IKNRESAARS RARKQAYTNE LELEVAHLIE ENARLKRLQQ KFCPEASAQL
201: PKKHTLYRTS TAPF

Best Arabidopsis Sequence Match ( AT4G35900.1 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.