Factsheet for GSMUA_Achr5P17850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
endoplasmic reticulum 1
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P02630_001
GSMUA_Achr1P02640_001
GSMUA_Achr1P17050_001
GSMUA_Achr2P03490_001
GSMUA_Achr2P05870_001
GSMUA_Achr2P11200_001
GSMUA_Achr2P20900_001
GSMUA_Achr3P02730_001
GSMUA_Achr3P03070_001
GSMUA_Achr3P21510_001
GSMUA_Achr3P22720_001
GSMUA_Achr4P05090_001
GSMUA_Achr4P29580_001
GSMUA_Achr5P11220_001
GSMUA_Achr5P11470_001
GSMUA_Achr5P17850_001
GSMUA_Achr8P07730_001
GSMUA_Achr9P07900_001
GSMUA_Achr9P21040_001
GSMUA_Achr9P24090_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	GSMUA_Achr10P...	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr1P17050_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr2P05870_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr2P20900_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr3P02730_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr3P21510_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr9P07900_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr1P02630_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr1P02640_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr2P03490_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr2P11200_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr4P05090_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr4P29580_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr5P11220_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr5P11470_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr5P17850_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr9P21040_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr9P24090_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr10P...	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr10P...	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr3P03070_001	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr3P22720_001	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr8P07730_001	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P02630_001	Banana	nucleus	12.81	65.96
GSMUA_Achr4P29580_001	Banana	nucleus	39.67	49.48
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	52.07	47.91
GSMUA_Achr2P11200_001	Banana	nucleus	45.87	45.49
GSMUA_Achr1P02640_001	Banana	nucleus	26.86	43.62
GSMUA_Achr5P11470_001	Banana	nucleus	37.19	43.27
KRH28841	Soybean	nucleus	21.49	41.27
GSMUA_Achr9P21040_001	Banana	nucleus	31.82	39.69
Solyc02g083520.2.1	Tomato	nucleus, plastid	34.71	38.71
PGSC0003DMT400009393	Potato	nucleus	26.45	38.1
CDY30347	Canola	nucleus	28.1	37.78
CDY26829	Canola	nucleus	28.1	37.36
KRH76618	Soybean	nucleus	27.27	36.67
VIT_00s0349g00050.t01	Wine grape	nucleus	27.27	36.46
GSMUA_Achr2P03490_001	Banana	nucleus	30.58	36.27
GSMUA_Achr4P05090_001	Banana	nucleus	24.79	34.88
PGSC0003DMT400061403	Potato	nucleus	32.23	34.36
AT4G35900.1	Thale cress	nucleus	38.43	32.63
CDX69181	Canola	nucleus	36.36	32.59
CDY24375	Canola	nucleus	30.99	32.47
VIT_18s0001g14890.t01	Wine grape	nucleus	28.51	32.24
CDY62049	Canola	nucleus	34.71	31.94
CDY24826	Canola	nucleus	31.82	31.69
CDX75538	Canola	nucleus	33.47	30.92
CDY47041	Canola	nucleus	32.23	30.12
Bra017735.1-P	Field mustard	nucleus	32.23	30.12
Bra037251.1-P	Field mustard	nucleus	17.36	30.0
CDX72563	Canola	nucleus	34.71	29.89
AT2G17770.3	Thale cress	nucleus	23.14	28.72
Bra002090.1-P	Field mustard	nucleus	21.07	27.72
GSMUA_Achr9P24090_001	Banana	nucleus	20.25	27.68
Solyc02g061990.2.1	Tomato	nucleus	20.25	27.53
Bra010504.1-P	Field mustard	nucleus	23.97	26.13
KRH61011	Soybean	nucleus	19.83	26.09
Bra011648.1-P	Field mustard	nucleus	27.27	25.19
KRH69737	Soybean	nucleus	22.31	22.41
KRH51676	Soybean	nucleus	21.07	22.37

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G17850_001	EnsemblPlants:GSMUA_Achr5P17850_001	EnsemblPlants:GSMUA_Achr5T17850_001	InterPro:IPR004827
UniProt:M0SZG4	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF211
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002957D9F	InterPro:bZIP	SEG:seg	:

Description

bZIP transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G17850_001]

Coordinates

chr5:-:18959819..18960814

Molecular Weight (calculated)

27308.0 Da

IEP (calculated)

10.594

GRAVY (calculated)

-0.831

Length

242 amino acids

Sequence
(BLAST)

001: MRLLEHDNHH KKNSRADHKS SSSNIVSSSS SSKSSPSSNP SVLIPPTIRR RTVEEVWNDI SLTTLHHERL LIPLDHQSYH HHHPASSPSF KGMILQDFLA
101: GPLNRPRTIS PHAFEYLRPH ADSHSNSSSN GQNACFIPFA ISGAIDGPPS PTALFSFCSK NRLPENSVVG TDRYRRRMIK NRESAARSRA RKQAYTNELE
201: LEVSRLKEEN AKLKKQYEEL RSAMVAQQHK SNTLQRSSTA PF

Best Arabidopsis Sequence Match ( AT4G35900.1 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.