Factsheet for Bra010504.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005783.1-P
Bra009508.1-P
Bra010504.1-P
Bra011648.1-P
Bra015710.1-P
Bra017735.1-P
Bra028815.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	Bra015710.1-P	AT4G20370.1	19656342
AT4G35900.1	Bra010504.1-P	AT4G35900.1	16099979
AT4G35900.1	Bra011648.1-P	AT4G35900.1	16099979
AT4G35900.1	Bra017735.1-P	AT4G35900.1	16099979
AT4G35900.1	Bra005783.1-P	AT5G03840.1	16099980
AT4G35900.1	Bra009508.1-P	AT5G03840.1	16099980
AT4G35900.1	Bra028815.1-P	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24826	Canola	nucleus	93.24	85.19
Bra017735.1-P	Field mustard	nucleus	66.22	56.76
Bra037251.1-P	Field mustard	nucleus	35.14	55.71
Bra011648.1-P	Field mustard	nucleus	58.11	49.24
AT4G35900.1	Thale cress	nucleus	63.06	49.12
Bra002090.1-P	Field mustard	nucleus	36.04	43.48
GSMUA_Achr1P02640_001	Banana	nucleus	23.42	34.9
Solyc02g061990.2.1	Tomato	nucleus	26.58	33.15
Solyc02g083520.2.1	Tomato	nucleus, plastid	30.63	31.34
GSMUA_Achr9P24090_001	Banana	nucleus	23.42	29.38
VIT_00s0349g00050.t01	Wine grape	nucleus	23.87	29.28
PGSC0003DMT400061403	Potato	nucleus	28.83	28.19
KRH76618	Soybean	nucleus	22.52	27.78
PGSC0003DMT400009393	Potato	nucleus	20.72	27.38
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	30.63	25.86
GSMUA_Achr4P29580_001	Banana	nucleus	22.52	25.77
GSMUA_Achr9P21040_001	Banana	nucleus	22.52	25.77
GSMUA_Achr5P11470_001	Banana	nucleus	22.97	24.52
GSMUA_Achr5P17850_001	Banana	nucleus	26.13	23.97
KRH28841	Soybean	nucleus	13.51	23.81
GSMUA_Achr2P03490_001	Banana	nucleus	21.17	23.04
GSMUA_Achr2P11200_001	Banana	nucleus	23.87	21.72
GSMUA_Achr4P05090_001	Banana	nucleus	16.67	21.51
GSMUA_Achr1P02630_001	Banana	nucleus	0.45	2.13

Protein Annotations

EnsemblPlants:Bra010504.1	EnsemblPlants:Bra010504.1-P	EnsemblPlantsGene:Bra010504	Gene3D:1.20.5.170	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	InterPro:bZIP	PANTHER:PTHR22952	PANTHER:PTHR22952:SF211	ScanProsite:PS00036	SEG:seg
SUPFAM:SSF57959	UniParc:UPI0002545C40	UniProt:M4D204	MapMan:15.5.4.1	:	:

Description

AT4G35900 (E=1e-057) FD, FD-1, atbzip14 | FD; DNA binding / protein binding / transcription activator/ transcription factor

Coordinates

chrA08:-:14881678..14882346

Molecular Weight (calculated)

24789.9 Da

IEP (calculated)

10.538

GRAVY (calculated)

-0.800

Length

222 amino acids

Sequence
(BLAST)

001: MFSSAKHQRN HRVSAPNKNK ILNKVPSISS SSSPSHSQVQ KRSLITMEEV WKDINLASIH HLNHHSQHPQ HNHEPRFRSH NQNPNSIFQD FLNRPLNQEP
101: TIPTSLSGDT TTVTALFSSS PLAPPATVLS LNSSACFEFL DNEDPLVTPN SNLHSHNHLT NVCSLDTPFE ALVTSTSFGK KRGQESNEGS GNRRHKRMIK
201: NRESAARSRA RKQECASPLL LS

Best Arabidopsis Sequence Match ( AT4G35900.2 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQECAS PLPS

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.