Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P02630_001 | Banana | nucleus | 14.71 | 63.83 |
| GSMUA_Achr9P21040_001 | Banana | nucleus | 50.0 | 52.58 |
| CDY30347 | Canola | nucleus | 31.86 | 36.11 |
| GSMUA_Achr1P02640_001 | Banana | nucleus | 25.98 | 35.57 |
| GSMUA_Achr4P05090_001 | Banana | nucleus | 29.9 | 35.47 |
| CDY26829 | Canola | nucleus | 31.37 | 35.16 |
| GSMUA_Achr4P29580_001 | Banana | nucleus | 33.33 | 35.05 |
| KRH28841 | Soybean | nucleus | 20.59 | 33.33 |
| KRH76618 | Soybean | nucleus | 28.92 | 32.78 |
| GSMUA_Achr9P24090_001 | Banana | nucleus | 28.43 | 32.77 |
| Bra037251.1-P | Field mustard | nucleus | 21.57 | 31.43 |
| VIT_18s0001g14890.t01 | Wine grape | nucleus | 32.35 | 30.84 |
| GSMUA_Achr5P17850_001 | Banana | nucleus | 36.27 | 30.58 |
| Solyc02g083520.2.1 | Tomato | nucleus, plastid | 32.35 | 30.41 |
| GSMUA_Achr5P11470_001 | Banana | nucleus | 30.88 | 30.29 |
| GSMUA_Achr5P11220_001 | Banana | nucleus, plastid | 38.73 | 30.04 |
| VIT_00s0349g00050.t01 | Wine grape | nucleus | 25.49 | 28.73 |
| PGSC0003DMT400061403 | Potato | nucleus | 31.86 | 28.63 |
| CDY24375 | Canola | nucleus | 30.88 | 27.27 |
| PGSC0003DMT400009393 | Potato | nucleus | 22.06 | 26.79 |
| GSMUA_Achr2P11200_001 | Banana | nucleus | 31.37 | 26.23 |
| KRH61011 | Soybean | nucleus | 23.53 | 26.09 |
| AT2G17770.3 | Thale cress | nucleus | 24.51 | 25.64 |
| CDY62049 | Canola | nucleus | 31.86 | 24.71 |
| CDY24826 | Canola | nucleus | 29.41 | 24.69 |
| AT4G35900.1 | Thale cress | nucleus | 34.31 | 24.56 |
| Bra002090.1-P | Field mustard | nucleus | 22.06 | 24.46 |
| CDX69181 | Canola | nucleus | 31.86 | 24.07 |
| CDY47041 | Canola | nucleus | 30.39 | 23.94 |
| Bra017735.1-P | Field mustard | nucleus | 30.39 | 23.94 |
| CDX75538 | Canola | nucleus | 29.9 | 23.28 |
| CDX72563 | Canola | nucleus | 31.86 | 23.13 |
| Bra010504.1-P | Field mustard | nucleus | 23.04 | 21.17 |
| KRH69737 | Soybean | nucleus | 25.0 | 21.16 |
| Solyc02g061990.2.1 | Tomato | nucleus | 18.14 | 20.79 |
| KRH51676 | Soybean | nucleus | 22.55 | 20.18 |
| Bra011648.1-P | Field mustard | nucleus | 23.53 | 18.32 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_Achr2G03490_001 | EnsemblPlants:GSMUA_Achr2P03490_001 | EnsemblPlants:GSMUA_Achr2T03490_001 | InterPro:IPR004827 | InterPro:Leuzip_CREB | UniProt:M0S4U0 |
| PFAM:PF00170 | PRINTS:PR00041 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF211 |
| SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI000294FFCF | InterPro:bZIP | SEG:seg | : |
Description
Putative Protein FD [Source:GMGC_GENE;Acc:GSMUA_Achr2G03490_001]
Coordinates
chr2:-:9176594..9177622
Molecular Weight (calculated)
22955.7 Da
IEP (calculated)
8.895
GRAVY (calculated)
-0.845
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVWKDISL STLHQDVPST PLLSFHHHHH RTFHTSNPTT TSSFGGITLE DFLADAPKEA TRVPPPSSRP PASIDPSPDN SVRFFGYDLN TSACDCKISG
101: SSFNDAHSEC TKKRSPEQQP NRSIDGQDGA ERRKKRIIKN RESAARSRAR KQAYINELEL EVARLLNENH ALRRELEELR MTVVASQNPT ASRRALQRTV
201: TAPF
101: SSFNDAHSEC TKKRSPEQQP NRSIDGQDGA ERRKKRIIKN RESAARSRAR KQAYINELEL EVARLLNENH ALRRELEELR MTVVASQNPT ASRRALQRTV
201: TAPF
001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
Arabidopsis Description
FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.