Factsheet for GSMUA_Achr1P17050_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02630_001
GSMUA_Achr1P02640_001
GSMUA_Achr2P03490_001
GSMUA_Achr2P11200_001
GSMUA_Achr4P05090_001
GSMUA_Achr4P29580_001
GSMUA_Achr5P11220_001
GSMUA_Achr5P11470_001
GSMUA_Achr5P17850_001
GSMUA_Achr5P23090_001
GSMUA_Achr9P21040_001
GSMUA_Achr9P24090_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20370.1	GSMUA_Achr1P02630_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr1P02640_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr2P03490_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr2P11200_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr4P05090_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr4P29580_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P11220_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P11470_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P17850_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr9P21040_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr9P24090_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P23090_001	AT5G38480.1	23613197
AT4G20370.1	GSMUA_AchrUn_...	AT5G38480.1	23613197
AT4G20370.1	GSMUA_AchrUn_...	AT5G38480.1	23613197

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P21510_001	Banana	cytosol	79.19	79.19
GSMUA_Achr2P20900_001	Banana	cytosol	71.1	70.69
KXG35998	Sorghum	cytosol	71.1	69.1
GSMUA_Achr9P07900_001	Banana	cytosol	68.79	68.39
Os09t0513500-00	Rice	cytosol, extracellular	39.88	68.32
GSMUA_Achr3P02730_001	Banana	cytosol	70.52	68.16
TraesCS5D01G304400.1	Wheat	cytosol	69.94	67.98
TraesCS5B01G296600.1	Wheat	cytosol	69.36	67.42
GSMUA_Achr10P...	Banana	cytosol	68.79	67.23
Bra022475.1-P	Field mustard	cytosol	65.9	65.14
CDY16409	Canola	cytosol	65.9	65.14
CDY60941	Canola	cytosol	65.9	65.14
AT4G20370.1	Thale cress	cytosol	65.32	64.57
GSMUA_Achr2P05870_001	Banana	cytosol	67.63	63.24
CDY07452	Canola	cytosol	63.01	62.29
KRH06761	Soybean	cytosol	63.01	62.29
Bra004117.1-P	Field mustard	cytosol	63.01	62.29
Solyc05g055660.1.1	Tomato	cytosol	49.71	61.43
CDY02016	Canola	cytosol	61.85	61.14
GSMUA_Achr2P19360_001	Banana	cytosol	62.43	61.02
GSMUA_Achr10P...	Banana	cytosol	61.27	60.92
KRG94768	Soybean	cytosol	61.27	60.57
CDX87561	Canola	cytosol	61.85	60.45
Bra015710.1-P	Field mustard	mitochondrion	53.76	60.39
GSMUA_Achr2P19310_001	Banana	cytosol	60.69	60.0
GSMUA_Achr5P06600_001	Banana	cytosol	60.69	60.0
PGSC0003DMT400041726	Potato	cytosol	60.12	59.77
PGSC0003DMT400060057	Potato	cytosol	59.54	59.54
GSMUA_Achr5P06420_001	Banana	cytosol	60.12	59.43
TraesCS5A01G297300.1	Wheat	cytosol	69.94	59.31
KRH46899	Soybean	cytosol	59.54	58.86
CDY39282	Canola	cytosol, mitochondrion, nucleus	39.31	58.62
PGSC0003DMT400041725	Potato	cytosol	59.54	58.19
KRH01790	Soybean	cytosol	58.96	57.95
Solyc05g053850.2.1	Tomato	cytosol	58.38	57.71
KRH01791	Soybean	cytosol	57.23	57.23
GSMUA_Achr4P08540_001	Banana	cytosol	58.96	56.98
GSMUA_Achr10P...	Banana	cytosol	57.8	56.5
Zm00001d006116_P001	Maize	cytosol	70.52	55.96
Solyc11g008640.1.1	Tomato	cytosol	56.07	55.75
GSMUA_Achr3P03070_001	Banana	cytosol	53.76	53.76
GSMUA_Achr11P...	Banana	cytosol	52.6	52.6
KRH46900	Soybean	cytosol	26.01	51.14
CDY13571	Canola	cytosol	59.54	50.99
GSMUA_Achr5P20040_001	Banana	cytosol	50.87	50.87
GSMUA_Achr10P...	Banana	cytosol	50.29	50.29
GSMUA_Achr8P07730_001	Banana	cytosol	50.87	50.29
AT1G65480.2	Thale cress	cytosol	63.58	50.23
GSMUA_Achr3P22720_001	Banana	cytosol	50.29	50.0
GSMUA_Achr10P...	Banana	cytosol	47.98	47.7
Solyc11g008660.1.1	Tomato	cytosol	35.84	47.33
KRH01789	Soybean	cytosol	36.42	47.01
GSMUA_Achr3P20880_001	Banana	cytosol	45.66	45.93
GSMUA_Achr6P09410_001	Banana	cytosol	45.66	45.93
GSMUA_AchrUn_...	Banana	cytosol	45.66	45.93
CDY65847	Canola	cytosol	26.01	31.69

Protein Annotations

EnsemblPlants:GSMUA_Achr1P17050_001	EnsemblPlants:GSMUA_Achr1T17050_001	EnsemblPlantsGene:GSMUA_Achr1G17050_001	Gene3D:3.90.280.10	InterPro:IPR036610	InterPro:PEBP
InterPro:PEBP-like_sf	InterPro:PEBP_euk	InterPro:Phosphotidylethanolamine-bd_CS	PANTHER:PTHR11362	PANTHER:PTHR11362:SF23	PFAM:PF01161
ScanProsite:PS01220	SUPFAM:SSF49777	UniParc:UPI000294DFEF	UniProt:M0S0L3	MapMan:27.8.1	:

Description

Protein TWIN SISTER of FT [Source:GMGC_GENE;Acc:GSMUA_Achr1G17050_001]

Coordinates

chr1:+:12729700..12733006

Molecular Weight (calculated)

19458.0 Da

IEP (calculated)

8.249

GRAVY (calculated)

-0.553

Length

173 amino acids

Sequence
(BLAST)

001: MSRGRDPLVL GQIVGDVLDP FTRSATMRIM YNNREISNGS RLRQSAVADK PQVQIEGNDP RKLYTLVMVD PDAPSPNNPT DREYLHWLVT DIPETLDASH
101: GNEIVSYESP RPQAGIHRIA LVLFRQQVQQ TVHAPGWRQN FSTRDFSAFH NLGLPAAATF FNCQRETGCG GRR

Best Arabidopsis Sequence Match ( AT1G65480.1 )
(BLAST)

001: MSINIRDPLI VSRVVGDVLD PFNRSITLKV TYGQREVTNG LDLRPSQVQN KPRVEIGGED LRNFYTLVMV DPDVPSPSNP HLREYLHWLV TDIPATTGTT
101: FGNEIVCYEN PSPTAGIHRV VFILFRQLGR QTVYAPGWRQ NFNTREFAEI YNLGLPVAAV FYNCQRESGC GGRRL

Arabidopsis Description

FTPEBP (phosphatidylethanolamine-binding protein) family protein [Source:TAIR;Acc:AT1G65480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.