Factsheet for GSMUA_Achr5P11220_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P02630_001
GSMUA_Achr1P02640_001
GSMUA_Achr1P17050_001
GSMUA_Achr2P03490_001
GSMUA_Achr2P05870_001
GSMUA_Achr2P11200_001
GSMUA_Achr2P20900_001
GSMUA_Achr3P02730_001
GSMUA_Achr3P03070_001
GSMUA_Achr3P21510_001
GSMUA_Achr3P22720_001
GSMUA_Achr4P05090_001
GSMUA_Achr4P29580_001
GSMUA_Achr5P11220_001
GSMUA_Achr5P11470_001
GSMUA_Achr5P17850_001
GSMUA_Achr8P07730_001
GSMUA_Achr9P07900_001
GSMUA_Achr9P21040_001
GSMUA_Achr9P24090_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	GSMUA_Achr10P...	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr1P17050_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr2P05870_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr2P20900_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr3P02730_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr3P21510_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr9P07900_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr1P02630_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr1P02640_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr2P03490_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr2P11200_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr4P05090_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr4P29580_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr5P11220_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr5P11470_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr5P17850_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr9P21040_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr9P24090_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr10P...	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr10P...	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr3P03070_001	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr3P22720_001	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr8P07730_001	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P02630_001	Banana	nucleus	14.07	78.72
GSMUA_Achr5P17850_001	Banana	nucleus	47.91	52.07
GSMUA_Achr1P02640_001	Banana	nucleus	27.38	48.32
GSMUA_Achr5P11470_001	Banana	nucleus	36.12	45.67
GSMUA_Achr4P29580_001	Banana	nucleus	31.94	43.3
Solyc02g083520.2.1	Tomato	nucleus, plastid	34.6	41.94
GSMUA_Achr2P11200_001	Banana	nucleus	38.4	41.39
CDY30347	Canola	nucleus	27.76	40.56
GSMUA_Achr9P21040_001	Banana	nucleus	29.28	39.69
KRH28841	Soybean	nucleus	19.01	39.68
CDY26829	Canola	nucleus	27.38	39.56
PGSC0003DMT400009393	Potato	nucleus	25.1	39.29
GSMUA_Achr2P03490_001	Banana	nucleus	30.04	38.73
KRH76618	Soybean	nucleus	26.24	38.33
VIT_00s0349g00050.t01	Wine grape	nucleus	25.86	37.57
PGSC0003DMT400061403	Potato	nucleus	31.18	36.12
VIT_18s0001g14890.t01	Wine grape	nucleus	29.28	35.98
CDY24375	Canola	nucleus	31.56	35.93
Bra037251.1-P	Field mustard	nucleus	19.01	35.71
AT4G35900.1	Thale cress	nucleus	37.26	34.39
Bra002090.1-P	Field mustard	nucleus	23.95	34.24
GSMUA_Achr4P05090_001	Banana	nucleus	22.05	33.72
CDY24826	Canola	nucleus	30.8	33.33
AT2G17770.3	Thale cress	nucleus	24.71	33.33
GSMUA_Achr9P24090_001	Banana	nucleus	22.43	33.33
CDX69181	Canola	nucleus	33.46	32.59
CDX75538	Canola	nucleus	31.94	32.06
CDY62049	Canola	nucleus	31.94	31.94
Bra010504.1-P	Field mustard	nucleus	25.86	30.63
CDY47041	Canola	nucleus	29.66	30.12
Bra017735.1-P	Field mustard	nucleus	29.66	30.12
CDX72563	Canola	nucleus	31.56	29.54
Solyc02g061990.2.1	Tomato	nucleus	19.77	29.21
KRH61011	Soybean	nucleus	19.39	27.72
Bra011648.1-P	Field mustard	nucleus	27.38	27.48
KRH51676	Soybean	nucleus	22.05	25.44
KRH69737	Soybean	nucleus	20.91	22.82

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G11220_001
EnsemblPlants:GSMUA_Achr5P11220_001	EnsemblPlants:GSMUA_Achr5T11220_001	InterPro:IPR004827	UniProt:M0SXK1	ScanProsite:PS00036	PANTHER:PTHR22952
PANTHER:PTHR22952:SF211	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000295A3F0	InterPro:bZIP	SEG:seg

Description

Putative Protein FD [Source:GMGC_GENE;Acc:GSMUA_Achr5G11220_001]

Coordinates

chr5:+:8060044..8061131

Molecular Weight (calculated)

28908.2 Da

IEP (calculated)

11.165

GRAVY (calculated)

-0.663

Length

263 amino acids

Sequence
(BLAST)

001: MWRSEQGNHH GSTNNRVASS SSSSSSSSRS SPSSTTSSLL PQAPKRRTME EVWKDIGLRS LHHQERLLTP LNHQRHSPTA SPSFRAIILQ DFLAGPLNRP
101: HAAAKNSPLP PSTMPPTALS LSPRLEIQLM GSDAHGNSNS SSNGCRASFI SPAFSDNMVR PPSPIGLFSF CSKEAMSEDP AACGDLRHKR MIKNRESAAR
201: SRARKQASPP ILLSAYINEL ELEVARLLEE QSRLQKELEE LRLAMAGKHS KRNTLRRSST APF

Best Arabidopsis Sequence Match ( AT4G35900.1 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.