Factsheet for PGSC0003DMT400061403

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009393
PGSC0003DMT400041725
PGSC0003DMT400041726
PGSC0003DMT400060057
PGSC0003DMT400061403
PGSC0003DMT400090526

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	PGSC0003DMT400041725	AT4G20370.1	19656342
AT4G35900.1	PGSC0003DMT400041726	AT4G20370.1	19656342
AT4G35900.1	PGSC0003DMT400060057	AT4G20370.1	19656342
AT4G35900.1	PGSC0003DMT400009393	AT4G35900.1	16099979
AT4G35900.1	PGSC0003DMT400061403	AT4G35900.1	16099979
AT4G35900.1	PGSC0003DMT400090526	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g061990.2.1	Tomato	nucleus	48.46	61.8
GSMUA_Achr1P02630_001	Banana	nucleus	11.01	53.19
KRH28841	Soybean	nucleus	26.87	48.41
PGSC0003DMT400009393	Potato	nucleus	35.68	48.21
VIT_00s0349g00050.t01	Wine grape	nucleus	36.12	45.3
KRH76618	Soybean	nucleus	33.48	42.22
CDY30347	Canola	nucleus	30.4	38.33
CDY26829	Canola	nucleus	30.4	37.91
GSMUA_Achr9P21040_001	Banana	nucleus	30.84	36.08
GSMUA_Achr4P05090_001	Banana	nucleus	26.87	35.47
CDX69181	Canola	nucleus	41.85	35.19
Bra037251.1-P	Field mustard	nucleus	21.59	35.0
CDY24375	Canola	nucleus	35.24	34.63
CDY24826	Canola	nucleus	37.0	34.57
GSMUA_Achr5P11470_001	Banana	nucleus	30.84	33.65
Bra017735.1-P	Field mustard	nucleus	38.33	33.59
CDY47041	Canola	nucleus	38.33	33.59
CDY62049	Canola	nucleus	38.77	33.46
AT2G17770.3	Thale cress	nucleus	28.63	33.33
CDX72563	Canola	nucleus	40.97	33.1
AT4G35900.1	Thale cress	nucleus	41.41	32.98
Bra002090.1-P	Field mustard	nucleus	26.43	32.61
GSMUA_Achr5P17850_001	Banana	nucleus	34.36	32.23
CDX75538	Canola	nucleus	37.0	32.06
GSMUA_Achr2P03490_001	Banana	nucleus	28.63	31.86
GSMUA_Achr4P29580_001	Banana	nucleus	26.87	31.44
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	36.12	31.18
GSMUA_Achr1P02640_001	Banana	nucleus	20.26	30.87
GSMUA_Achr9P24090_001	Banana	nucleus	22.91	29.38
Bra010504.1-P	Field mustard	nucleus	28.19	28.83
Bra011648.1-P	Field mustard	nucleus	32.16	27.86
GSMUA_Achr2P11200_001	Banana	nucleus	28.63	26.64

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:102586775	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M1C7G1	PFAM:PF07716
EnsemblPlantsGene:PGSC0003DMG400023897	PGSC:PGSC0003DMG400023897	EnsemblPlants:PGSC0003DMT400061403	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF211	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000295861A	RefSeq:XP_006361944.1	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

Self-pruning G-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023897]

Coordinates

chr2:+:19963326..19964689

Molecular Weight (calculated)

24906.3 Da

IEP (calculated)

10.303

GRAVY (calculated)

-0.788

Length

227 amino acids

Sequence
(BLAST)

001: MWSSSNEEHQ GLNKNLATNS SKSSSSSSST SCSYNHPINP ILINSKTMEE VWKDINLSCS RDPQNTTAGG IILQDLLARP FANNPSTAAA YGSPVPPLPP
101: PPVTMLTLNS GPEFHFFSTL NPIRQTQQKN ISNEGLASPA PGRKRHPESN NNNSGDQKSK RMIKNRESAA RSRARKQAYT NELEMEVANL MEENARLKRQ
201: QQQLCLASAG ALLPKMKSLN RTSTAPF

Best Arabidopsis Sequence Match ( AT2G17770.2 )
(BLAST)

001: MEEVWKEINL GSLHYHRQLN IGHEPMLKNQ NPNNSIFQDF LNMPLNQPPP PPPPPSSSTI VTALYGSLPL PPPATVLSLN SGVGFEFLDT TENLLASNPR
101: SFEESAKFGC LGKKRGQDSD DTRGDRRYKR MIKNRESAAR SRARKQAYTN ELELEIAHLQ TENARLKIQQ EQLKIAEATQ NQVKKTLQRS STAPF

Arabidopsis Description

ATBZIP27basic region/leucine zipper motif 27 [Source:TAIR;Acc:AT2G17770]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.