Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 1
- mitochondrion 1
- nucleus 4
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35900.1 | CDX87561 | AT4G20370.1 | 19656342 |
| AT4G35900.1 | CDY02016 | AT4G20370.1 | 19656342 |
| AT4G35900.1 | CDY13571 | AT4G20370.1 | 19656342 |
| AT4G35900.1 | CDY65847 | AT4G20370.1 | 19656342 |
| AT4G35900.1 | CDX69181 | AT4G35900.1 | 16099979 |
| AT4G35900.1 | CDX72563 | AT4G35900.1 | 16099979 |
| AT4G35900.1 | CDX75538 | AT4G35900.1 | 16099979 |
| AT4G35900.1 | CDY24826 | AT4G35900.1 | 16099979 |
| AT4G35900.1 | CDY47041 | AT4G35900.1 | 16099979 |
| AT4G35900.1 | CDY62049 | AT4G35900.1 | 16099979 |
| AT4G35900.1 | CDX70281 | AT5G03840.1 | 16099980 |
| AT4G35900.1 | CDX80890 | AT5G03840.1 | 16099980 |
| AT4G35900.1 | CDY04899 | AT5G03840.1 | 16099980 |
| AT4G35900.1 | CDY14173 | AT5G03840.1 | 16099980 |
| AT4G35900.1 | CDY41432 | AT5G03840.1 | 16099980 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017735.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX72563 | Canola | nucleus | 93.44 | 86.12 |
| CDY24826 | Canola | nucleus | 66.41 | 70.78 |
| CDY62049 | Canola | nucleus | 69.5 | 68.44 |
| AT4G35900.1 | Thale cress | nucleus | 66.8 | 60.7 |
| CDX69181 | Canola | nucleus | 61.78 | 59.26 |
| CDX75538 | Canola | nucleus | 58.3 | 57.63 |
| CDY30347 | Canola | nucleus | 36.68 | 52.78 |
| CDY26829 | Canola | nucleus | 35.91 | 51.1 |
| Solyc02g083520.2.1 | Tomato | nucleus, plastid | 38.61 | 46.08 |
| CDY24375 | Canola | nucleus | 40.15 | 45.02 |
| GSMUA_Achr1P02630_001 | Banana | nucleus | 8.11 | 44.68 |
| PGSC0003DMT400009393 | Potato | nucleus | 28.19 | 43.45 |
| KRH76618 | Soybean | nucleus | 30.12 | 43.33 |
| KRH28841 | Soybean | nucleus | 20.85 | 42.86 |
| VIT_00s0349g00050.t01 | Wine grape | nucleus | 29.73 | 42.54 |
| PGSC0003DMT400061403 | Potato | nucleus | 33.59 | 38.33 |
| GSMUA_Achr5P11470_001 | Banana | nucleus | 29.34 | 36.54 |
| GSMUA_Achr4P29580_001 | Banana | nucleus | 26.64 | 35.57 |
| GSMUA_Achr1P02640_001 | Banana | nucleus | 20.08 | 34.9 |
| GSMUA_Achr9P21040_001 | Banana | nucleus | 25.87 | 34.54 |
| Solyc02g061990.2.1 | Tomato | nucleus | 23.55 | 34.27 |
| GSMUA_Achr4P05090_001 | Banana | nucleus | 21.62 | 32.56 |
| GSMUA_Achr5P17850_001 | Banana | nucleus | 30.12 | 32.23 |
| GSMUA_Achr9P24090_001 | Banana | nucleus | 21.24 | 31.07 |
| GSMUA_Achr2P03490_001 | Banana | nucleus | 23.94 | 30.39 |
| GSMUA_Achr5P11220_001 | Banana | nucleus, plastid | 30.12 | 29.66 |
| GSMUA_Achr2P11200_001 | Banana | nucleus | 26.64 | 28.28 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | GO:A0A078IB39 | UniProt:A0A078IB39 | EnsemblPlants:CDY47041 | ProteinID:CDY47041 |
| ProteinID:CDY47041.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00086647001 | InterPro:IPR004827 |
| ScanProsite:PS00036 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF211 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0002540BCC |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
BnaAnng08290DBnaAnng08290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IB39]
Coordinates
chrLK032695:+:80763..81791
Molecular Weight (calculated)
28744.5 Da
IEP (calculated)
10.838
GRAVY (calculated)
-0.991
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFSANHQRN NRVSATSKNK TLNNVSSISS SSSPSHPQDS QSQKKSLVTM EDVWKDINLG SIQSQHPQGN HEPRFGSHNH QNQNPNSIFQ DFLNRPLNQE
101: PTIPTGLTMS SSSNGDTTTV TALLSSPPLA PPATVLSLNS GAGFEFLDNQ DPLVTPKYNL HSHNHLNTSF EALVTPTCFG KKRGQESNGE GSGNRRNKRM
201: IKNRESAARS RARKQEQLKV AHLKAENARL MRQQDQLRME AENQQPKKNT LQRASTAPF
101: PTIPTGLTMS SSSNGDTTTV TALLSSPPLA PPATVLSLNS GAGFEFLDNQ DPLVTPKYNL HSHNHLNTSF EALVTPTCFG KKRGQESNGE GSGNRRNKRM
201: IKNRESAARS RARKQEQLKV AHLKAENARL MRQQDQLRME AENQQPKKNT LQRASTAPF
001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
Arabidopsis Description
FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.