Factsheet for Bra017735.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
endoplasmic reticulum 1
mitochondrion 1
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005783.1-P
Bra009508.1-P
Bra010504.1-P
Bra011648.1-P
Bra015710.1-P
Bra017735.1-P
Bra028815.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	Bra015710.1-P	AT4G20370.1	19656342
AT4G35900.1	Bra010504.1-P	AT4G35900.1	16099979
AT4G35900.1	Bra011648.1-P	AT4G35900.1	16099979
AT4G35900.1	Bra017735.1-P	AT4G35900.1	16099979
AT4G35900.1	Bra005783.1-P	AT5G03840.1	16099980
AT4G35900.1	Bra009508.1-P	AT5G03840.1	16099980
AT4G35900.1	Bra028815.1-P	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47041	Canola	nucleus	100.0	100.0
Bra010504.1-P	Field mustard	nucleus	56.76	66.22
AT4G35900.1	Thale cress	nucleus	66.8	60.7
Bra037251.1-P	Field mustard	nucleus	28.57	52.86
Bra011648.1-P	Field mustard	nucleus	51.35	50.76
Bra002090.1-P	Field mustard	nucleus	33.2	46.74
Solyc02g083520.2.1	Tomato	nucleus, plastid	38.61	46.08
GSMUA_Achr1P02630_001	Banana	nucleus	8.11	44.68
PGSC0003DMT400009393	Potato	nucleus	28.19	43.45
KRH76618	Soybean	nucleus	30.12	43.33
KRH28841	Soybean	nucleus	20.85	42.86
VIT_00s0349g00050.t01	Wine grape	nucleus	29.73	42.54
PGSC0003DMT400061403	Potato	nucleus	33.59	38.33
GSMUA_Achr5P11470_001	Banana	nucleus	29.34	36.54
GSMUA_Achr4P29580_001	Banana	nucleus	26.64	35.57
GSMUA_Achr1P02640_001	Banana	nucleus	20.08	34.9
GSMUA_Achr9P21040_001	Banana	nucleus	25.87	34.54
Solyc02g061990.2.1	Tomato	nucleus	23.55	34.27
GSMUA_Achr4P05090_001	Banana	nucleus	21.62	32.56
GSMUA_Achr5P17850_001	Banana	nucleus	30.12	32.23
GSMUA_Achr9P24090_001	Banana	nucleus	21.24	31.07
GSMUA_Achr2P03490_001	Banana	nucleus	23.94	30.39
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	30.12	29.66
GSMUA_Achr2P11200_001	Banana	nucleus	26.64	28.28

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra017735	EnsemblPlants:Bra017735.1	EnsemblPlants:Bra017735.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	UniProt:M4DMK0	ScanProsite:PS00036	PANTHER:PTHR22952
PANTHER:PTHR22952:SF211	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002540BCC	InterPro:bZIP	SEG:seg

Description

AT4G35900 (E=2e-054) FD, FD-1, atbzip14 | FD; DNA binding / protein binding / transcription activator/ transcription factor

Coordinates

chrA03:+:30118716..30119744

Molecular Weight (calculated)

28744.5 Da

IEP (calculated)

10.838

GRAVY (calculated)

-0.991

Length

259 amino acids

Sequence
(BLAST)

001: MLFSANHQRN NRVSATSKNK TLNNVSSISS SSSPSHPQDS QSQKKSLVTM EDVWKDINLG SIQSQHPQGN HEPRFGSHNH QNQNPNSIFQ DFLNRPLNQE
101: PTIPTGLTMS SSSNGDTTTV TALLSSPPLA PPATVLSLNS GAGFEFLDNQ DPLVTPKYNL HSHNHLNTSF EALVTPTCFG KKRGQESNGE GSGNRRNKRM
201: IKNRESAARS RARKQEQLKV AHLKAENARL MRQQDQLRME AENQQPKKNT LQRASTAPF

Best Arabidopsis Sequence Match ( AT4G35900.1 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.