Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P02630_001 | Banana | nucleus | 13.4 | 55.32 |
| GSMUA_Achr2P03490_001 | Banana | nucleus | 52.58 | 50.0 |
| CDY30347 | Canola | nucleus | 37.63 | 40.56 |
| CDY26829 | Canola | nucleus | 36.6 | 39.01 |
| GSMUA_Achr4P05090_001 | Banana | nucleus | 34.54 | 38.95 |
| KRH28841 | Soybean | nucleus | 24.74 | 38.1 |
| VIT_00s0349g00050.t01 | Wine grape | nucleus | 35.05 | 37.57 |
| KRH76618 | Soybean | nucleus | 34.02 | 36.67 |
| VIT_18s0001g14890.t01 | Wine grape | nucleus | 39.69 | 35.98 |
| GSMUA_Achr1P02640_001 | Banana | nucleus | 26.29 | 34.23 |
| Solyc02g083520.2.1 | Tomato | nucleus, plastid | 37.63 | 33.64 |
| Bra037251.1-P | Field mustard | nucleus | 24.23 | 33.57 |
| GSMUA_Achr5P11470_001 | Banana | nucleus | 35.05 | 32.69 |
| GSMUA_Achr4P29580_001 | Banana | nucleus | 32.47 | 32.47 |
| GSMUA_Achr5P17850_001 | Banana | nucleus | 39.69 | 31.82 |
| PGSC0003DMT400009393 | Potato | nucleus | 27.32 | 31.55 |
| PGSC0003DMT400061403 | Potato | nucleus | 36.08 | 30.84 |
| GSMUA_Achr9P24090_001 | Banana | nucleus | 27.84 | 30.51 |
| CDY24375 | Canola | nucleus | 35.57 | 29.87 |
| GSMUA_Achr5P11220_001 | Banana | nucleus, plastid | 39.69 | 29.28 |
| CDY24826 | Canola | nucleus | 35.57 | 28.4 |
| KRH61011 | Soybean | nucleus | 26.8 | 28.26 |
| GSMUA_Achr2P11200_001 | Banana | nucleus | 35.05 | 27.87 |
| CDY62049 | Canola | nucleus | 37.11 | 27.38 |
| AT4G35900.1 | Thale cress | nucleus | 39.69 | 27.02 |
| AT2G17770.3 | Thale cress | nucleus | 26.8 | 26.67 |
| CDX69181 | Canola | nucleus | 37.11 | 26.67 |
| CDY47041 | Canola | nucleus | 34.54 | 25.87 |
| Bra017735.1-P | Field mustard | nucleus | 34.54 | 25.87 |
| CDX75538 | Canola | nucleus | 34.54 | 25.57 |
| Bra002090.1-P | Field mustard | nucleus | 23.71 | 25.0 |
| CDX72563 | Canola | nucleus | 36.08 | 24.91 |
| Solyc02g061990.2.1 | Tomato | nucleus | 22.16 | 24.16 |
| KRH51676 | Soybean | nucleus | 26.8 | 22.81 |
| Bra010504.1-P | Field mustard | nucleus | 25.77 | 22.52 |
| KRH69737 | Soybean | nucleus | 26.29 | 21.16 |
| Bra011648.1-P | Field mustard | nucleus | 26.29 | 19.47 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr9G21040_001 | EnsemblPlants:GSMUA_Achr9P21040_001 | EnsemblPlants:GSMUA_Achr9T21040_001 | InterPro:IPR004827 |
| UniProt:M0U263 | PFAM:PF00170 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF211 |
| SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI000294E8F3 | InterPro:bZIP | SEG:seg | : |
Description
Putative Protein FD [Source:GMGC_GENE;Acc:GSMUA_Achr9G21040_001]
Coordinates
chr9:+:25731529..25732251
Molecular Weight (calculated)
21641.4 Da
IEP (calculated)
10.860
GRAVY (calculated)
-0.870
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGRNMEEVW KDISLSTLHQ DVPSTPVLAF HPATTISSFR AVMLQDFIAD AFKAENRAPP PSTHSPPASL SPTSDNSRQF FGYDLNASAS ASGSNAAQSE
101: STKKRSPEKR PNRSVDRQSG VEQRKKRMIK NRESAARSRA RKQAYRNELE LEAARLLNEN EMLKRESEQL RMTVAAQNPT ASKPTLQRTL TAPF
101: STKKRSPEKR PNRSVDRQSG VEQRKKRMIK NRESAARSRA RKQAYRNELE LEAARLLNEN EMLKRESEQL RMTVAAQNPT ASKPTLQRTL TAPF
001: MEEVWKEINL GSLHYHRQLN IGHEPMLKNQ NPNNSIFQDF LNMPLNQPPP PPPPPSSSTI VTALYGSLPL PPPATVLSLN SGVGFEFLDT TENLLASNPR
101: SFEESAKFGC LGKKRGQDSD DTRGDRRYKR MIKNRESAAR SRARKQAYTN ELELEIAHLQ TENARLKIQQ EQLKIAEATQ NQVKKTLQRS STAPF
101: SFEESAKFGC LGKKRGQDSD DTRGDRRYKR MIKNRESAAR SRARKQAYTN ELELEIAHLQ TENARLKIQQ EQLKIAEATQ NQVKKTLQRS STAPF
Arabidopsis Description
ATBZIP27basic region/leucine zipper motif 27 [Source:TAIR;Acc:AT2G17770]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.