Factsheet for GSMUA_Achr3P02730_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02630_001
GSMUA_Achr1P02640_001
GSMUA_Achr2P03490_001
GSMUA_Achr2P11200_001
GSMUA_Achr4P05090_001
GSMUA_Achr4P29580_001
GSMUA_Achr5P11220_001
GSMUA_Achr5P11470_001
GSMUA_Achr5P17850_001
GSMUA_Achr5P23090_001
GSMUA_Achr9P21040_001
GSMUA_Achr9P24090_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20370.1	GSMUA_Achr1P02630_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr1P02640_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr2P03490_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr2P11200_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr4P05090_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr4P29580_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P11220_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P11470_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P17850_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr9P21040_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr9P24090_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P23090_001	AT5G38480.1	23613197
AT4G20370.1	GSMUA_AchrUn_...	AT5G38480.1	23613197
AT4G20370.1	GSMUA_AchrUn_...	AT5G38480.1	23613197

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P20900_001	Banana	cytosol	85.47	87.93
GSMUA_Achr10P...	Banana	cytosol	83.8	84.75
GSMUA_Achr9P07900_001	Banana	cytosol	82.12	84.48
EES11032	Sorghum	cytosol	80.45	82.76
EES07110	Sorghum	cytosol	79.89	82.18
Zm00001d025737_P001	Maize	cytosol	79.89	81.71
Os04t0488400-01	Rice	cytosol	79.33	81.61
TraesCS2A01G347000.1	Wheat	cytosol	78.77	81.03
TraesCS2D01G345700.1	Wheat	cytosol	78.77	81.03
TraesCS2B01G365300.1	Wheat	cytosol	78.77	81.03
TraesCS6A01G214400.1	Wheat	cytosol	78.21	80.46
TraesCS6D01G197100.1	Wheat	cytosol	78.21	80.46
TraesCS6B01G244400.1	Wheat	cytosol	77.65	79.89
HORVU2Hr1G084540.1	Barley	cytosol	77.65	79.89
Zm00001d017134_P001	Maize	cytosol	77.09	79.31
GSMUA_Achr2P05870_001	Banana	cytosol	81.01	78.38
OQU83339	Sorghum	cytosol	75.98	76.84
Zm00001d004630_P001	Maize	cytosol	75.42	76.27
TraesCS4D01G072300.1	Wheat	cytosol	75.98	75.98
TraesCS5B01G020300.1	Wheat	cytosol	73.74	75.43
TraesCS4B01G073800.1	Wheat	cytosol	75.42	75.42
HORVU4Hr1G012200.2	Barley	cytosol	74.86	74.86
Zm00001d003226_P001	Maize	cytosol	64.25	74.19
GSMUA_Achr3P21510_001	Banana	cytosol	68.72	71.1
Os11t0293800-00	Rice	cytosol	74.86	70.53
GSMUA_Achr1P17050_001	Banana	cytosol	68.16	70.52
Zm00001d024023_P001	Maize	cytosol	68.16	69.71
KRH06761	Soybean	cytosol	67.04	68.57
Os12t0232300-00	Rice	cytosol	67.04	67.8
KRG94768	Soybean	cytosol	65.92	67.43
GSMUA_Achr10P...	Banana	cytosol	66.48	67.23
AT4G20370.1	Thale cress	cytosol	65.36	66.86
Bra022475.1-P	Field mustard	cytosol	64.8	66.29
CDY60941	Canola	cytosol	64.8	66.29
GSMUA_Achr2P19310_001	Banana	cytosol	64.8	66.29
CDY16409	Canola	cytosol	64.8	66.29
EES16923	Sorghum	cytosol	65.36	66.1
GSMUA_Achr10P...	Banana	cytosol	63.69	65.52
Bra004117.1-P	Field mustard	cytosol	63.69	65.14
CDY07452	Canola	cytosol	63.69	65.14
PGSC0003DMT400060057	Potato	cytosol	62.01	64.16
HORVU5Hr1G048110.1	Barley	cytosol	63.69	64.04
TraesCS5D01G159500.1	Wheat	cytosol	63.69	64.04
TraesCS2B01G511400.1	Wheat	cytosol	61.45	63.95
TraesCS2A01G485000.1	Wheat	cytosol	60.89	63.74
TraesCS2D01G485100.1	Wheat	cytosol	61.45	63.58
TraesCS5B01G152800.1	Wheat	cytosol	63.13	63.48
TraesCS5A01G154600.1	Wheat	cytosol	63.13	63.48
HORVU2Hr1G108520.1	Barley	cytosol	60.89	63.37
KRH01790	Soybean	cytosol	62.01	63.07
Solyc11g008640.1.1	Tomato	cytosol	60.89	62.64
PGSC0003DMT400041726	Potato	cytosol	60.89	62.64
KRH01791	Soybean	cytosol	60.34	62.43
HORVU2Hr1G117710.1	Barley	cytosol	60.34	62.43
GSMUA_Achr4P08540_001	Banana	cytosol	62.01	62.01
TraesCS2D01G538000.1	Wheat	cytosol	52.51	61.84
Bra015710.1-P	Field mustard	mitochondrion	53.07	61.69
TraesCS2B01G567400.1	Wheat	cytosol	59.22	61.27
TraesCS2A01G536600.1	Wheat	cytosol	59.22	61.27
TraesCS2A01G536700.1	Wheat	cytosol	59.22	61.27
TraesCS2A01G536900.1	Wheat	cytosol	59.22	61.27
CDY39282	Canola	cytosol, mitochondrion, nucleus	39.66	61.21
CDX87561	Canola	cytosol	60.34	61.02
Solyc05g055660.1.1	Tomato	cytosol	47.49	60.71
TraesCS2D01G538100.1	Wheat	cytosol	58.66	60.69
CDY02016	Canola	cytosol	59.22	60.57
TraesCS3A01G013100.1	Wheat	cytosol	59.22	60.57
GSMUA_Achr5P06420_001	Banana	cytosol	59.22	60.57
GSMUA_Achr5P06600_001	Banana	cytosol	59.22	60.57
TraesCS2B01G567200.1	Wheat	cytosol	58.1	60.12
PGSC0003DMT400041725	Potato	cytosol	59.22	59.89
KRH46899	Soybean	cytosol	58.1	59.43
TraesCS3D01G011600.1	Wheat	cytosol	58.1	59.43
TraesCS3D01G011500.1	Wheat	cytosol	58.1	59.43
GSMUA_Achr2P19360_001	Banana	cytosol	58.66	59.32
Solyc05g053850.2.1	Tomato	cytosol	57.54	58.86
TraesCS3D01G011700.1	Wheat	cytosol	57.54	58.86
TraesCS3B01G015200.1	Wheat	cytosol	57.54	58.86
TraesCS3B01G015600.2	Wheat	cytosol	57.54	58.86
HORVU3Hr1G002020.1	Barley	cytosol	56.98	58.62
HORVU4Hr1G089690.1	Barley	cytosol	43.02	58.33
TraesCS3B01G015800.1	Wheat	cytosol	56.98	58.29
GSMUA_Achr3P03070_001	Banana	cytosol	55.31	57.23
TraesCS3B01G015700.1	Wheat	cytosol	54.75	56.0
TraesCSU01G045800.1	Wheat	cytosol	54.75	56.0
GSMUA_Achr11P...	Banana	cytosol	53.63	55.49
GSMUA_Achr8P07730_001	Banana	cytosol	54.19	55.43
GSMUA_Achr10P...	Banana	cytosol	53.07	54.91
AT1G65480.2	Thale cress	cytosol	67.04	54.79
KRH46900	Soybean	cytosol	26.82	54.55
GSMUA_Achr5P20040_001	Banana	cytosol	52.51	54.34
GSMUA_Achr3P22720_001	Banana	cytosol	52.51	54.02
GSMUA_Achr10P...	Banana	cytosol	50.84	52.3
KRH01789	Soybean	cytosol	37.43	50.0
CDY13571	Canola	cytosol	56.42	50.0
GSMUA_AchrUn_...	Banana	cytosol	46.93	48.84
GSMUA_Achr6P09410_001	Banana	cytosol	46.93	48.84
GSMUA_Achr3P20880_001	Banana	cytosol	46.37	48.26
Solyc11g008660.1.1	Tomato	cytosol	35.2	48.09
CDY65847	Canola	cytosol	22.91	28.87

Protein Annotations

EnsemblPlants:GSMUA_Achr3P02730_001	EnsemblPlants:GSMUA_Achr3T02730_001	EnsemblPlantsGene:GSMUA_Achr3G02730_001	Gene3D:3.90.280.10	InterPro:IPR036610	InterPro:PEBP
InterPro:PEBP-like_sf	InterPro:PEBP_euk	InterPro:Phosphotidylethanolamine-bd_CS	PANTHER:PTHR11362	PANTHER:PTHR11362:SF23	PFAM:PF01161
ScanProsite:PS01220	SEG:seg	SUPFAM:SSF49777	UniParc:UPI000294ECF6	UniProt:M0SB91	MapMan:27.8.1

Description

Protein FLOWERING LOCUS T [Source:GMGC_GENE;Acc:GSMUA_Achr3G02730_001]

Coordinates

chr3:-:1777244..1779521

Molecular Weight (calculated)

20230.1 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.355

Length

179 amino acids

Sequence
(BLAST)

001: MSRDALVVGN VVGDVLDPFV KSATMKITYN KELTNGSELK PSMVATEPRV EMRGHNTRNL YTLVMVDPDA PSPSNPTKRE YLHWLVTDIP ETTNATYGNE
101: IVSYESPRPT AGIHRFVFVL FRQSVRQTIY APGWRQNFST RDFAAVYNLG DPVAAMFFNC QRENGCGGRR YIRTIIGFN

Best Arabidopsis Sequence Match ( AT1G65480.1 )
(BLAST)

001: MSINIRDPLI VSRVVGDVLD PFNRSITLKV TYGQREVTNG LDLRPSQVQN KPRVEIGGED LRNFYTLVMV DPDVPSPSNP HLREYLHWLV TDIPATTGTT
101: FGNEIVCYEN PSPTAGIHRV VFILFRQLGR QTVYAPGWRQ NFNTREFAEI YNLGLPVAAV FYNCQRESGC GGRRL

Arabidopsis Description

FTPEBP (phosphatidylethanolamine-binding protein) family protein [Source:TAIR;Acc:AT1G65480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.