Factsheet for GSMUA_Achr1P02640_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P02630_001
GSMUA_Achr1P02640_001
GSMUA_Achr1P17050_001
GSMUA_Achr2P03490_001
GSMUA_Achr2P05870_001
GSMUA_Achr2P11200_001
GSMUA_Achr2P20900_001
GSMUA_Achr3P02730_001
GSMUA_Achr3P03070_001
GSMUA_Achr3P21510_001
GSMUA_Achr3P22720_001
GSMUA_Achr4P05090_001
GSMUA_Achr4P29580_001
GSMUA_Achr5P11220_001
GSMUA_Achr5P11470_001
GSMUA_Achr5P17850_001
GSMUA_Achr8P07730_001
GSMUA_Achr9P07900_001
GSMUA_Achr9P21040_001
GSMUA_Achr9P24090_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	GSMUA_Achr10P...	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr1P17050_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr2P05870_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr2P20900_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr3P02730_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr3P21510_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr9P07900_001	AT4G20370.1	19656342
AT4G35900.1	GSMUA_Achr1P02630_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr1P02640_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr2P03490_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr2P11200_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr4P05090_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr4P29580_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr5P11220_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr5P11470_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr5P17850_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr9P21040_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr9P24090_001	AT4G35900.1	16099979
AT4G35900.1	GSMUA_Achr10P...	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr10P...	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr3P03070_001	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr3P22720_001	AT5G03840.1	16099980
AT4G35900.1	GSMUA_Achr8P07730_001	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037251.1-P	Field mustard	nucleus	31.54	33.57
GSMUA_Achr5P11470_001	Banana	nucleus	41.61	29.81
GSMUA_Achr9P24090_001	Banana	nucleus	34.23	28.81
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	48.32	27.38
GSMUA_Achr4P29580_001	Banana	nucleus	35.57	27.32
CDY30347	Canola	nucleus	32.89	27.22
GSMUA_Achr5P17850_001	Banana	nucleus	43.62	26.86
CDY26829	Canola	nucleus	32.21	26.37
GSMUA_Achr9P21040_001	Banana	nucleus	34.23	26.29
VIT_18s0001g14890.t01	Wine grape	nucleus	37.58	26.17
KRH76618	Soybean	nucleus	31.54	26.11
GSMUA_Achr2P03490_001	Banana	nucleus	35.57	25.98
AT2G17770.3	Thale cress	nucleus	32.89	25.13
Bra002090.1-P	Field mustard	nucleus	30.2	24.46
Solyc02g083520.2.1	Tomato	nucleus, plastid	35.57	24.42
Bra010504.1-P	Field mustard	nucleus	34.9	23.42
GSMUA_Achr2P11200_001	Banana	nucleus	38.26	23.36
CDY24826	Canola	nucleus	37.58	23.05
GSMUA_Achr4P05090_001	Banana	nucleus	25.5	22.09
VIT_00s0349g00050.t01	Wine grape	nucleus	26.17	21.55
KRH28841	Soybean	nucleus	18.12	21.43
CDY24375	Canola	nucleus	32.89	21.21
CDX75538	Canola	nucleus	36.91	20.99
CDY62049	Canola	nucleus	36.91	20.91
CDX69181	Canola	nucleus	36.91	20.37
PGSC0003DMT400061403	Potato	nucleus	30.87	20.26
Solyc02g061990.2.1	Tomato	nucleus	24.16	20.22
CDY47041	Canola	nucleus	34.9	20.08
Bra017735.1-P	Field mustard	nucleus	34.9	20.08
AT4G35900.1	Thale cress	nucleus	38.26	20.0
Bra011648.1-P	Field mustard	nucleus	34.9	19.85
CDX72563	Canola	nucleus	36.24	19.22
KRH61011	Soybean	nucleus	22.82	18.48
PGSC0003DMT400009393	Potato	nucleus	19.46	17.26
KRH51676	Soybean	nucleus	26.17	17.11
KRH69737	Soybean	nucleus	26.17	16.18
GSMUA_Achr1P02630_001	Banana	nucleus	2.68	8.51

Protein Annotations

EnsemblPlants:GSMUA_Achr1P02640_001	EnsemblPlants:GSMUA_Achr1T02640_001	EnsemblPlantsGene:GSMUA_Achr1G02640_001	Gene3D:1.20.5.170	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	InterPro:bZIP	PANTHER:PTHR22952	PANTHER:PTHR22952:SF211	ScanProsite:PS00036	SEG:seg
SUPFAM:SSF57959	UniParc:UPI000296C021	UniProt:M0RWH2	MapMan:15.5.4.1	:	:

Description

Putative Protein FD [Source:GMGC_GENE;Acc:GSMUA_Achr1G02640_001]

Coordinates

chr1:-:2168372..2168884

Molecular Weight (calculated)

16689.7 Da

IEP (calculated)

11.252

GRAVY (calculated)

-0.819

Length

149 amino acids

Sequence
(BLAST)

001: MEEVWRDISL CSLHHQERQL TPMNHHQRHS PATSPSFRAT MLQDFLAGPL NRPHAVPPDD VPRPRSSTTP LTQLSLSPTL EIQPMGSDAH ANSSSSGYNA
101: SFISPAFSGN MRRPPCDRRH KRMIKNRESA ARSRARKQAF PPSSLDPFA

Best Arabidopsis Sequence Match ( AT4G35900.2 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQECAS PLPS

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.