CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89440
KRG94768
KRG96189
KRH01789
KRH01790
KRH01791
KRH06761
KRH28841
KRH30839
KRH32734
KRH46899
KRH46900
KRH67905
KRH76618

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	KRG94768	AT4G20370.1	19656342
AT4G35900.1	KRH01789	AT4G20370.1	19656342
AT4G35900.1	KRH01790	AT4G20370.1	19656342
AT4G35900.1	KRH01791	AT4G20370.1	19656342
AT4G35900.1	KRH06761	AT4G20370.1	19656342
AT4G35900.1	KRH46899	AT4G20370.1	19656342
AT4G35900.1	KRH46900	AT4G20370.1	19656342
AT4G35900.1	KRH28841	AT4G35900.1	16099979
AT4G35900.1	KRH76618	AT4G35900.1	16099979
AT4G35900.1	KRG89440	AT5G03840.1	16099980
AT4G35900.1	KRG96189	AT5G03840.1	16099980
AT4G35900.1	KRH30839	AT5G03840.1	16099980
AT4G35900.1	KRH32734	AT5G03840.1	16099980
AT4G35900.1	KRH67905	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28841	Soybean	nucleus	46.11	65.87
GSMUA_Achr1P02630_001	Banana	nucleus	12.78	48.94
CDY30347	Canola	nucleus	41.11	41.11
VIT_00s0349g00050.t01	Wine grape	nucleus	41.11	40.88
CDY26829	Canola	nucleus	40.56	40.11
Solyc02g083520.2.1	Tomato	nucleus, plastid	45.56	37.79
PGSC0003DMT400009393	Potato	nucleus	33.89	36.31
GSMUA_Achr4P05090_001	Banana	nucleus	33.33	34.88
CDY24375	Canola	nucleus	43.89	34.2
GSMUA_Achr9P21040_001	Banana	nucleus	36.67	34.02
Bra037251.1-P	Field mustard	nucleus	26.11	33.57
PGSC0003DMT400061403	Potato	nucleus	42.22	33.48
GSMUA_Achr1P02640_001	Banana	nucleus	26.11	31.54
GSMUA_Achr4P29580_001	Banana	nucleus	32.78	30.41
GSMUA_Achr5P11470_001	Banana	nucleus	35.0	30.29
Bra017735.1-P	Field mustard	nucleus	43.33	30.12
CDY47041	Canola	nucleus	43.33	30.12
CDX72563	Canola	nucleus	46.67	29.89
Bra002090.1-P	Field mustard	nucleus	30.56	29.89
CDY24826	Canola	nucleus	40.0	29.63
AT4G35900.1	Thale cress	nucleus	46.11	29.12
GSMUA_Achr2P03490_001	Banana	nucleus	32.78	28.92
CDY62049	Canola	nucleus	42.22	28.9
CDX69181	Canola	nucleus	42.78	28.52
GSMUA_Achr2P11200_001	Banana	nucleus	37.22	27.46
GSMUA_Achr5P17850_001	Banana	nucleus	36.67	27.27
AT2G17770.3	Thale cress	nucleus	29.44	27.18
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	38.33	26.24
Solyc02g061990.2.1	Tomato	nucleus	25.56	25.84
KRH61011	Soybean	nucleus	25.56	25.0
GSMUA_Achr9P24090_001	Banana	nucleus	24.44	24.86
CDX75538	Canola	nucleus	35.56	24.43
KRH69737	Soybean	nucleus	30.56	22.82
KRH51676	Soybean	nucleus	28.89	22.81
Bra010504.1-P	Field mustard	nucleus	27.78	22.52
Bra011648.1-P	Field mustard	nucleus	27.78	19.08

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	UniProt:A0A0R0LBJ6	EMBL:ACUP02000630	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G163500
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EnsemblPlants:KRH76618	ProteinID:KRH76618	ProteinID:KRH76618.1
PFAM:PF00170	PANTHER:PTHR22952	PANTHER:PTHR22952:SF211	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0006EDDC99
InterPro:bZIP	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:50118121..50119739

Molecular Weight (calculated)

20190.7 Da

IEP (calculated)

8.753

GRAVY (calculated)

-0.722

Length

180 amino acids

Sequence
(BLAST)

001: MEEVWKDINL ATLNEQSTIS TRPNVEGVMF QDFLARPFTT IDPPNTTLLS SASSETAANS LFSPASPGPP LVTLSLSSLP HHHHFRFEHP SSIPPPPSNK
101: RFAQPADHCS TIGDRRNKRM IKNRESAARS RAYTNELELE VEHLKEENAR LKRQQQQLYE AAVSEQKKKG TLCRASTAPF

Best Arabidopsis Sequence Match ( AT4G35900.1 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.