CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61011	Soybean	nucleus	47.37	58.7
GSMUA_Achr1P02630_001	Banana	nucleus	7.46	36.17
KRH28841	Soybean	nucleus	16.23	29.37
KRH76618	Soybean	nucleus	22.81	28.89
GSMUA_Achr9P21040_001	Banana	nucleus	22.81	26.8
GSMUA_Achr1P02640_001	Banana	nucleus	17.11	26.17
GSMUA_Achr4P05090_001	Banana	nucleus	19.3	25.58
GSMUA_Achr5P11470_001	Banana	nucleus	21.49	23.56
GSMUA_Achr4P29580_001	Banana	nucleus	19.74	23.2
GSMUA_Achr2P03490_001	Banana	nucleus	20.18	22.55
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	25.44	22.05
KRH69737	Soybean	nucleus	23.25	21.99
GSMUA_Achr5P17850_001	Banana	nucleus	22.37	21.07
GSMUA_Achr2P11200_001	Banana	nucleus	21.05	19.67
GSMUA_Achr9P24090_001	Banana	nucleus	14.91	19.21

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EMBL:ACUP02003383	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G022300	GO:GO:0003674
GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR004827	UniProt:K7KSL3	EnsemblPlants:KRH51676	ProteinID:KRH51676	ProteinID:KRH51676.1
PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF137	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI000296BD75	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:1657191..1659313

Molecular Weight (calculated)

25438.9 Da

IEP (calculated)

10.056

GRAVY (calculated)

-0.633

Length

228 amino acids

Sequence
(BLAST)

001: MGRRYPGGGL IVWGHEPGTS LSTLNVEIPL SLAKVEKKEE GGEAWPRGHP NLQRYFVRLS VREKAMASSP CDCWPHSSSS SSSSIEHVWN DIKLASLSNS
101: SVDLDLNNNN HSVSVSSFLN QPLSTFLTLT STSSSSSVFH KHDHSLLSVS DPNTLQDQRH TRVIKNRESA VRSRARKQAY RKGLEVEISR LTEENSRLKR
201: QLKELQRCLC SSHTPRMAAP CRTSSSPF

Best Arabidopsis Sequence Match ( AT4G35900.1 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.