Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28841 | Soybean | nucleus | 48.94 | 18.25 |
| PGSC0003DMT400009393 | Potato | nucleus | 59.57 | 16.67 |
| VIT_00s0349g00050.t01 | Wine grape | nucleus | 63.83 | 16.57 |
| GSMUA_Achr2P03490_001 | Banana | nucleus | 63.83 | 14.71 |
| GSMUA_Achr4P29580_001 | Banana | nucleus | 59.57 | 14.43 |
| GSMUA_Achr5P11220_001 | Banana | nucleus, plastid | 78.72 | 14.07 |
| GSMUA_Achr5P11470_001 | Banana | nucleus | 61.7 | 13.94 |
| GSMUA_Achr9P21040_001 | Banana | nucleus | 55.32 | 13.4 |
| GSMUA_Achr4P05090_001 | Banana | nucleus | 48.94 | 13.37 |
| CDY30347 | Canola | nucleus | 51.06 | 13.33 |
| CDY26829 | Canola | nucleus | 51.06 | 13.19 |
| Solyc02g083520.2.1 | Tomato | nucleus, plastid | 59.57 | 12.9 |
| GSMUA_Achr5P17850_001 | Banana | nucleus | 65.96 | 12.81 |
| KRH76618 | Soybean | nucleus | 48.94 | 12.78 |
| VIT_18s0001g14890.t01 | Wine grape | nucleus | 53.19 | 11.68 |
| GSMUA_Achr2P11200_001 | Banana | nucleus | 57.45 | 11.07 |
| PGSC0003DMT400061403 | Potato | nucleus | 53.19 | 11.01 |
| KRH61011 | Soybean | nucleus | 40.43 | 10.33 |
| CDX69181 | Canola | nucleus | 57.45 | 10.0 |
| CDY24375 | Canola | nucleus | 48.94 | 9.96 |
| AT4G35900.1 | Thale cress | nucleus | 57.45 | 9.47 |
| CDY62049 | Canola | nucleus | 46.81 | 8.37 |
| CDX72563 | Canola | nucleus | 48.94 | 8.19 |
| CDY47041 | Canola | nucleus | 44.68 | 8.11 |
| Bra017735.1-P | Field mustard | nucleus | 44.68 | 8.11 |
| CDX75538 | Canola | nucleus | 44.68 | 8.02 |
| KRH51676 | Soybean | nucleus | 36.17 | 7.46 |
| CDY24826 | Canola | nucleus | 36.17 | 7.0 |
| KRH69737 | Soybean | nucleus | 27.66 | 5.39 |
| GSMUA_Achr1P02640_001 | Banana | nucleus | 8.51 | 2.68 |
| Bra011648.1-P | Field mustard | nucleus | 10.64 | 1.91 |
| GSMUA_Achr9P24090_001 | Banana | nucleus | 6.38 | 1.69 |
| Bra002090.1-P | Field mustard | nucleus | 4.26 | 1.09 |
| AT2G17770.3 | Thale cress | nucleus | 4.26 | 1.03 |
| Bra037251.1-P | Field mustard | nucleus | 2.13 | 0.71 |
| Solyc02g061990.2.1 | Tomato | nucleus | 2.13 | 0.56 |
| Bra010504.1-P | Field mustard | nucleus | 2.13 | 0.45 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P02630_001 | EnsemblPlants:GSMUA_Achr1T02630_001 | EnsemblPlantsGene:GSMUA_Achr1G02630_001 | ncoils:Coil | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF211 |
| SEG:seg | UniParc:UPI0002962587 | UniProt:M0RWH1 | MapMan:35.2 | : | : |
Description
Protein FD [Source:GMGC_GENE;Acc:GSMUA_Achr1G02630_001]
Coordinates
chr1:-:2167848..2168323
Molecular Weight (calculated)
5459.6 Da
IEP (calculated)
9.371
GRAVY (calculated)
-0.811
Length
47 amino acids
Sequence
(BLAST)
(BLAST)
1: MNELELEVAH LLEENSRLRK ELEELRSAMA AKHPKRKALQ RSSTAPF
001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
Arabidopsis Description
FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.