Factsheet for Solyc02g083520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g061990.2.1
Solyc02g083520.2.1
Solyc05g053850.2.1
Solyc05g055660.1.1
Solyc09g009560.1.1
Solyc11g008640.1.1
Solyc11g008660.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	Solyc05g053850.2.1	AT4G20370.1	19656342
AT4G35900.1	Solyc05g055660.1.1	AT4G20370.1	19656342
AT4G35900.1	Solyc11g008640.1.1	AT4G20370.1	19656342
AT4G35900.1	Solyc11g008660.1.1	AT4G20370.1	19656342
AT4G35900.1	Solyc02g061990.2.1	AT4G35900.1	16099979
AT4G35900.1	Solyc02g083520.2.1	AT4G35900.1	16099979
AT4G35900.1	Solyc09g009560.1.1	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009393	Potato	nucleus	62.67	80.95
GSMUA_Achr1P02630_001	Banana	nucleus	12.9	59.57
KRH28841	Soybean	nucleus	28.11	48.41
VIT_00s0349g00050.t01	Wine grape	nucleus	38.25	45.86
KRH76618	Soybean	nucleus	37.79	45.56
CDY30347	Canola	nucleus	35.94	43.33
CDY26829	Canola	nucleus	35.48	42.31
Solyc02g061990.2.1	Tomato	nucleus	33.64	41.01
Bra017735.1-P	Field mustard	nucleus	46.08	38.61
CDY47041	Canola	nucleus	46.08	38.61
Bra037251.1-P	Field mustard	nucleus	24.88	38.57
CDY24826	Canola	nucleus	42.86	38.27
CDY62049	Canola	nucleus	46.08	38.02
GSMUA_Achr5P11470_001	Banana	nucleus	36.41	37.98
GSMUA_Achr9P21040_001	Banana	nucleus	33.64	37.63
CDY24375	Canola	nucleus	39.63	37.23
CDX72563	Canola	nucleus	47.0	36.3
GSMUA_Achr1P02640_001	Banana	nucleus	24.42	35.57
AT4G35900.1	Thale cress	nucleus	46.54	35.44
CDX69181	Canola	nucleus	43.78	35.19
GSMUA_Achr4P29580_001	Banana	nucleus	31.34	35.05
GSMUA_Achr4P05090_001	Banana	nucleus	27.65	34.88
Bra002090.1-P	Field mustard	nucleus	29.49	34.78
GSMUA_Achr5P17850_001	Banana	nucleus	38.71	34.71
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	41.94	34.6
CDX75538	Canola	nucleus	40.55	33.59
AT2G17770.3	Thale cress	nucleus	29.95	33.33
GSMUA_Achr2P03490_001	Banana	nucleus	30.41	32.35
GSMUA_Achr9P24090_001	Banana	nucleus	26.27	32.2
GSMUA_Achr2P11200_001	Banana	nucleus	35.02	31.15
Bra010504.1-P	Field mustard	nucleus	31.34	30.63
Bra011648.1-P	Field mustard	nucleus	33.18	27.48

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	UniProt:A1YTV0	ncoils:Coil	EMBL:EF136919	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF211	SMART:SM00338	SUPFAM:SSF57959
EnsemblPlantsGene:Solyc02g083520.2	EnsemblPlants:Solyc02g083520.2.1	UniParc:UPI0000EBBF85	InterPro:bZIP	SEG:seg	:

Description

Self-pruning G-box protein [Source:UniProtKB/TrEMBL;Acc:A1YTV0]

Coordinates

chr2:+:46887881..46888805

Molecular Weight (calculated)

24275.0 Da

IEP (calculated)

10.094

GRAVY (calculated)

-0.890

Length

217 amino acids

Sequence
(BLAST)

001: MWSSSSDNRG LSASSSSSSS SSHSPFSPRL KTMEEVWKDI NLSSLQDHTT NYSRDHHHLH DHNHQAANFG GMILQDFLAR PFANESSPAA AAAAASPVSA
101: TTMLNLNSVP ELHFFDNPLR QNSILHQPNA SGRKRVVPET EDNSTGDRRN QRMIKNRESA ARSRARKQAY MNELESEVAH LVEENARLKK QQQQLRVDAA
201: NQVPKKNTLY RTSTAPF

Best Arabidopsis Sequence Match ( AT4G35900.1 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.