Factsheet for Solyc09g009560.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g061990.2.1
Solyc02g063070.2.1
Solyc02g083520.2.1
Solyc03g034180.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03840.1	Solyc02g061990.2.1	AT4G35900.1	16099980
AT5G03840.1	Solyc02g083520.2.1	AT4G35900.1	16099980
AT5G03840.1	Solyc02g063070.2.1	AT5G38480.1	23613197
AT5G03840.1	Solyc03g034180.2.1	AT5G38480.1	23613197

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090526	Potato	cytosol	95.35	95.35
VIT_08s0007g03450.t01	Wine grape	cytosol	79.65	79.65
EES16646	Sorghum	cytosol	79.07	78.61
Os12t0152000-00	Rice	cytosol, extracellular	77.91	77.46
Os11t0152500-00	Rice	cytosol	77.33	76.88
GSMUA_Achr3P22720_001	Banana	cytosol	77.33	76.44
Os04t0411400-01	Rice	cytosol	76.74	76.3
KRG96189	Soybean	cytosol	76.74	76.3
TraesCS5D01G136300.1	Wheat	cytosol	76.74	76.3
TraesCS5B01G127600.1	Wheat	cytosol	76.74	76.3
EES09271	Sorghum	cytosol	76.74	76.3
TraesCS5A01G128600.1	Wheat	cytosol	76.74	76.3
GSMUA_Achr10P...	Banana	cytosol	76.16	75.72
GSMUA_Achr3P03070_001	Banana	cytosol	76.16	75.72
Zm00001d023420_P001	Maize	cytosol	76.16	75.72
GSMUA_Achr8P07730_001	Banana	cytosol	76.74	75.43
EES06907	Sorghum	cytosol	75.58	75.14
Os02t0531600-01	Rice	cytosol	75.58	75.14
Zm00001d050649_P001	Maize	cytosol	75.58	75.14
TraesCS2B01G310700.1	Wheat	cytosol	75.0	74.57
EES12110	Sorghum	cytosol	74.42	73.99
HORVU2Hr1G072750.4	Barley	cytosol	74.42	73.99
TraesCS2D01G292000.1	Wheat	cytosol	74.42	73.99
TraesCSU01G202000.1	Wheat	cytosol	74.42	73.99
Zm00001d003804_P001	Maize	cytosol, extracellular	75.58	73.86
Zm00001d025346_P001	Maize	cytosol	73.84	73.41
HORVU5Hr1G042230.13	Barley	cytosol	74.42	73.14
Zm00001d052537_P001	Maize	cytosol	74.42	72.32
GSMUA_Achr10P...	Banana	cytosol	72.67	71.84
CDX80890	Canola	cytosol	71.51	70.69
KRH32734	Soybean	cytosol	70.93	70.11
KRH30839	Soybean	cytosol	70.35	69.94
Bra028815.1-P	Field mustard	cytosol	72.67	69.83
CDY04899	Canola	cytosol	72.67	69.83
CDY14173	Canola	cytosol	72.67	69.83
TraesCS4D01G305800.1	Wheat	cytosol	70.93	69.71
TraesCS4A01G409200.1	Wheat	cytosol	70.93	69.71
AT5G03840.1	Thale cress	cytosol	71.51	69.49
Bra005783.1-P	Field mustard	cytosol	71.51	69.49
KRG89440	Soybean	cytosol	30.23	69.33
TraesCS4B01G307600.1	Wheat	cytosol	70.35	69.14
Solyc06g074350.2.1	Tomato	cytosol	69.77	68.57
CDY41432	Canola	cytosol	69.19	66.85
Solyc01g009560.1.1	Tomato	cytosol	67.44	66.29
Bra009508.1-P	Field mustard	cytosol	68.02	65.73
CDX70281	Canola	cytosol	68.02	65.73
Zm00001d044705_P001	Maize	extracellular	77.91	65.05
Solyc03g026050.2.1	Tomato	cytosol	64.53	63.43
Solyc03g063100.1.1	Tomato	cytosol	58.14	56.5
KRH67905	Soybean	plastid	76.74	54.32
Solyc05g055660.1.1	Tomato	cytosol	43.6	53.57
HORVU4Hr1G078770.1	Barley	cytosol	62.21	52.71
Solyc01g009580.1.1	Tomato	plastid	66.28	51.35
Solyc11g008650.1.1	Tomato	mitochondrion	20.93	49.32
Solyc05g053850.2.1	Tomato	cytosol	50.0	49.14
Solyc11g008640.1.1	Tomato	cytosol	49.42	48.85
Solyc03g119100.1.1	Tomato	cytosol	48.84	48.55
Solyc02g079290.2.1	Tomato	cytosol	47.09	45.51
Solyc11g008660.1.1	Tomato	cytosol	32.56	42.75

Protein Annotations

MapMan:27.8.1	Gene3D:3.90.280.10	ProteinID:AAO31795.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003712
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005773
GO:GO:0005886	GO:GO:0006139	GO:GO:0006623	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009744	GO:GO:0009791	GO:GO:0009908	GO:GO:0009910
GO:GO:0009987	GO:GO:0016020	GO:GO:0031982	GO:GO:0090344	GO:GO:1903506	InterPro:IPR036610
InterPro:PEBP	InterPro:PEBP-like_sf	InterPro:PEBP_euk	PFAM:PF01161	ScanProsite:PS01220	PANTHER:PTHR11362
PANTHER:PTHR11362:SF13	InterPro:Phosphotidylethanolamine-bd_CS	UniProt:Q84XK7	SUPFAM:SSF49777	EnsemblPlantsGene:Solyc09g009560.1	EnsemblPlants:Solyc09g009560.1.1
InterPro:TFL1-like	UniParc:UPI0000006013	:	:	:	:

Description

Protein TERMINAL FLOWER 1 [Source:Projected from Arabidopsis thaliana (AT5G03840) UniProtKB/Swiss-Prot;Acc:P93003]

Coordinates

chr9:+:2968569..2971135

Molecular Weight (calculated)

19536.3 Da

IEP (calculated)

9.147

GRAVY (calculated)

-0.377

Length

172 amino acids

Sequence
(BLAST)

001: MARSLEPLIV GRVIGDVIDS FNPTIKMSIT YNNKLVCNGH ELFPSVVSSR PKVEVQGGDL RTFFTLVMTD PDVPGPSDPY MREHLHWIIT DIPGTTDATF
101: GRELVSYETP RPNIGIHRFV FVLFKQKSRS SVSQPTSRDH FNTRNFAQEN NLEQPVTAVF FNAQRETAAR RR

Best Arabidopsis Sequence Match ( AT5G03840.1 )
(BLAST)

001: MENMGTRVIE PLIMGRVVGD VLDFFTPTTK MNVSYNKKQV SNGHELFPSS VSSKPRVEIH GGDLRSFFTL VMIDPDVPGP SDPFLKEHLH WIVTNIPGTT
101: DATFGKEVVS YELPRPSIGI HRFVFVLFRQ KQRRVIFPNI PSRDHFNTRK FAVEYDLGLP VAAVFFNAQR ETAARKR

Arabidopsis Description

TFL1Protein TERMINAL FLOWER 1 [Source:UniProtKB/Swiss-Prot;Acc:P93003]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.