Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0710800-01 | |
| Os11t0546900-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G03840.1 | Os03t0710800-01 | AT5G38480.1 | 23613197 |
| AT5G03840.1 | Os11t0546900-01 | AT5G38480.1 | 23613197 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0531600-01 | Rice | cytosol | 91.33 | 91.33 |
| TraesCSU01G202000.1 | Wheat | cytosol | 90.75 | 90.75 |
| EES12110 | Sorghum | cytosol | 90.75 | 90.75 |
| TraesCS2B01G310700.1 | Wheat | cytosol | 90.17 | 90.17 |
| HORVU2Hr1G072750.4 | Barley | cytosol | 90.17 | 90.17 |
| TraesCS2D01G292000.1 | Wheat | cytosol | 89.6 | 89.6 |
| Zm00001d025346_P001 | Maize | cytosol | 87.86 | 87.86 |
| Zm00001d003804_P001 | Maize | cytosol, extracellular | 89.02 | 87.5 |
| Os11t0152500-00 | Rice | cytosol | 86.71 | 86.71 |
| GSMUA_Achr3P03070_001 | Banana | cytosol | 85.55 | 85.55 |
| Os12t0152000-00 | Rice | cytosol, extracellular | 85.55 | 85.55 |
| TraesCS4D01G305800.1 | Wheat | cytosol | 86.13 | 85.14 |
| GSMUA_Achr10P... | Banana | cytosol | 83.81 | 83.81 |
| TraesCS4B01G307600.1 | Wheat | cytosol | 84.39 | 83.43 |
| TraesCS4A01G409200.1 | Wheat | cytosol | 84.39 | 83.43 |
| GSMUA_Achr3P22720_001 | Banana | cytosol | 83.81 | 83.33 |
| VIT_08s0007g03450.t01 | Wine grape | cytosol | 80.92 | 81.4 |
| GSMUA_Achr8P07730_001 | Banana | cytosol | 82.08 | 81.14 |
| KRG96189 | Soybean | cytosol | 79.19 | 79.19 |
| PGSC0003DMT400090526 | Potato | cytosol | 76.88 | 77.33 |
| GSMUA_Achr10P... | Banana | cytosol | 77.46 | 77.01 |
| VIT_06s0080g00290.t01 | Wine grape | cytosol | 76.88 | 76.88 |
| Solyc09g009560.1.1 | Tomato | cytosol | 76.3 | 76.74 |
| PGSC0003DMT400018307 | Potato | cytosol | 65.32 | 76.35 |
| CDX77127 | Canola | cytosol | 49.71 | 74.78 |
| KRH30839 | Soybean | cytosol | 74.57 | 74.57 |
| CDY27416 | Canola | cytosol | 75.14 | 74.29 |
| CDY51916 | Canola | cytosol | 75.14 | 74.29 |
| CDY30540 | Canola | cytosol | 75.14 | 74.29 |
| Bra034357.1-P | Field mustard | cytosol | 75.14 | 74.29 |
| KRH26623 | Soybean | cytosol | 62.43 | 73.97 |
| CDY04503 | Canola | cytosol | 74.57 | 73.71 |
| Bra012010.1-P | Field mustard | cytosol | 74.57 | 73.71 |
| AT2G27550.1 | Thale cress | cytosol | 74.57 | 73.71 |
| CDX71440 | Canola | cytosol | 73.99 | 73.14 |
| CDX83272 | Canola | cytosol | 73.99 | 73.14 |
| Bra000506.1-P | Field mustard | cytosol | 73.99 | 73.14 |
| KRH32734 | Soybean | cytosol | 73.41 | 72.99 |
| CDY31183 | Canola | cytosol | 73.41 | 72.57 |
| Solyc06g074350.2.1 | Tomato | cytosol | 73.41 | 72.57 |
| CDX80890 | Canola | cytosol | 70.52 | 70.11 |
| CDY14173 | Canola | cytosol | 72.25 | 69.83 |
| CDY04899 | Canola | cytosol | 72.25 | 69.83 |
| Bra028815.1-P | Field mustard | cytosol | 72.25 | 69.83 |
| CDY41432 | Canola | cytosol | 71.1 | 69.1 |
| AT5G03840.1 | Thale cress | cytosol | 70.52 | 68.93 |
| Bra005783.1-P | Field mustard | cytosol | 70.52 | 68.93 |
| Bra009508.1-P | Field mustard | cytosol | 69.94 | 67.98 |
| CDX70281 | Canola | cytosol | 69.94 | 67.98 |
| KRG89440 | Soybean | cytosol | 28.9 | 66.67 |
| KRH22689 | Soybean | cytosol | 62.43 | 65.06 |
| HORVU4Hr1G078770.1 | Barley | cytosol | 72.83 | 62.07 |
| Os06t0157700-01 | Rice | nucleus | 58.96 | 56.98 |
| KRH67905 | Soybean | plastid | 78.03 | 55.56 |
| Os06t0157500-01 | Rice | nucleus | 56.07 | 54.49 |
| Os01t0111600-01 | Rice | cytosol | 53.76 | 53.45 |
| Os04t0488400-01 | Rice | cytosol | 52.6 | 52.3 |
| Os01t0202700-00 | Rice | cytosol | 53.18 | 52.27 |
| Os06t0552900-00 | Rice | extracellular | 51.45 | 51.45 |
| Os06t0498800-01 | Rice | cytosol, extracellular, plastid | 52.02 | 51.14 |
| Os05t0518000-00 | Rice | cytosol | 49.13 | 48.85 |
| Os12t0232300-00 | Rice | cytosol | 49.13 | 48.02 |
| Os09t0513500-00 | Rice | cytosol, extracellular | 27.75 | 47.52 |
| Os11t0293800-00 | Rice | cytosol | 51.45 | 46.84 |
| Os01t0748800-00 | Rice | cytosol | 23.12 | 44.44 |
| Os01t0218500-02 | Rice | cytosol, plastid | 57.23 | 35.87 |
| Os02t0232300-00 | Rice | cytosol | 37.57 | 35.14 |
Protein Annotations
| EMBL:AK110622 | EnsemblPlants:Os04t0411400-01 | EnsemblPlantsGene:Os04g0411400 | EntrezGene:4335774 | Gene3D:3.90.280.10 | InterPro:IPR036610 |
| InterPro:PEBP | InterPro:PEBP-like_sf | InterPro:PEBP_euk | InterPro:Phosphotidylethanolamine-bd_CS | PANTHER:PTHR11362 | PANTHER:PTHR11362:SF43 |
| PFAM:PF01161 | ProteinID:BAF14647.1 | ProteinID:BAS89115.1 | ProteinID:CAD40659.2 | ProteinID:EAZ30664.1 | RefSeq:XP_015634144.1 |
| ScanProsite:PS01220 | SUPFAM:SSF49777 | UniParc:UPI00001A528A | UniProt:Q7XVG4 | MapMan:27.8.1 | : |
Description
RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 4Similar to Terminal flower 1-like protein. (Os04t0411400-01)
Coordinates
chr4:-:20319029..20321385
Molecular Weight (calculated)
19407.2 Da
IEP (calculated)
9.963
GRAVY (calculated)
-0.296
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRVLEPLVV GKVIGEVIDN FNPTVKMTAT YSSNKQVFNG HELFPSAVVS KPRVEVQGGD LRSFFTLVMT DPDVPGPSDP YLREHLHWIV TDIPGTTDAS
101: FGREVVSYES PKPNIGIHRF VLVLFKQKRR QAVTPPSSRD YFSTRRFAAD NDLGLPVAAV YFNAQRETAA RRR
101: FGREVVSYES PKPNIGIHRF VLVLFKQKRR QAVTPPSSRD YFSTRRFAAD NDLGLPVAAV YFNAQRETAA RRR
001: MARISSDPLM VGRVIGDVVD NCLQAVKMTV TYNSDKQVYN GHELFPSVVT YKPKVEVHGG DMRSFFTLVM TDPDVPGPSD PYLREHLHWI VTDIPGTTDV
101: SFGKEIIGYE MPRPNIGIHR FVYLLFKQTR RGSVVSVPSY RDQFNTREFA HENDLGLPVA AVFFNCQRET AARRR
101: SFGKEIIGYE MPRPNIGIHR FVYLLFKQTR RGSVVSVPSY RDQFNTREFA HENDLGLPVA AVFFNCQRET AARRR
Arabidopsis Description
CENProtein CENTRORADIALIS-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNV5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.