Factsheet for VIT_08s0007g03450.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0349g00050.t01
VIT_14s0006g03230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03840.1	VIT_00s0349g00050.t01	AT4G35900.1	16099980
AT5G03840.1	VIT_14s0006g03230.t01	AT5G38480.1	23613197

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0152500-00	Rice	cytosol	82.56	82.08
TraesCS5A01G128600.1	Wheat	cytosol	81.98	81.5
TraesCS5B01G127600.1	Wheat	cytosol	81.98	81.5
TraesCS5D01G136300.1	Wheat	cytosol	81.98	81.5
EES16646	Sorghum	cytosol	81.98	81.5
Os04t0411400-01	Rice	cytosol	81.4	80.92
EES06907	Sorghum	cytosol	81.4	80.92
Zm00001d050649_P001	Maize	cytosol	80.81	80.35
KRG96189	Soybean	cytosol	80.81	80.35
EES09271	Sorghum	cytosol	80.81	80.35
PGSC0003DMT400090526	Potato	cytosol	80.23	80.23
Solyc09g009560.1.1	Tomato	cytosol	79.65	79.65
Os12t0152000-00	Rice	cytosol, extracellular	79.65	79.19
Os02t0531600-01	Rice	cytosol	79.65	79.19
HORVU2Hr1G072750.4	Barley	cytosol	79.07	78.61
TraesCSU01G202000.1	Wheat	cytosol	79.07	78.61
TraesCS2B01G310700.1	Wheat	cytosol	79.07	78.61
TraesCS2D01G292000.1	Wheat	cytosol	79.07	78.61
GSMUA_Achr3P03070_001	Banana	cytosol	78.49	78.03
VIT_06s0080g00290.t01	Wine grape	cytosol	78.49	78.03
HORVU5Hr1G042230.13	Barley	cytosol	79.07	77.71
Zm00001d023420_P001	Maize	cytosol	77.91	77.46
GSMUA_Achr3P22720_001	Banana	cytosol	77.91	77.01
EES12110	Sorghum	cytosol	77.33	76.88
KRH32734	Soybean	cytosol	77.33	76.44
GSMUA_Achr10P...	Banana	cytosol	76.74	76.3
Zm00001d052537_P001	Maize	cytosol	77.91	75.71
KRH30839	Soybean	cytosol	75.58	75.14
Zm00001d025346_P001	Maize	cytosol	75.58	75.14
Zm00001d003804_P001	Maize	cytosol, extracellular	76.74	75.0
TraesCS4D01G305800.1	Wheat	cytosol	76.16	74.86
GSMUA_Achr8P07730_001	Banana	cytosol	75.58	74.29
TraesCS4A01G409200.1	Wheat	cytosol	75.58	74.29
TraesCS4B01G307600.1	Wheat	cytosol	75.0	73.71
CDX80890	Canola	cytosol	74.42	73.56
GSMUA_Achr10P...	Banana	cytosol	73.84	72.99
Bra005783.1-P	Field mustard	cytosol	75.0	72.88
Bra028815.1-P	Field mustard	cytosol	75.58	72.63
AT5G03840.1	Thale cress	cytosol	74.42	72.32
CDY14173	Canola	cytosol	75.0	72.07
CDY04899	Canola	cytosol	75.0	72.07
CDY41432	Canola	cytosol	72.67	70.22
VIT_16s0100g00700.t01	Wine grape	cytosol	70.35	69.94
CDX70281	Canola	cytosol	72.09	69.66
Bra009508.1-P	Field mustard	cytosol	72.09	69.66
Zm00001d044705_P001	Maize	extracellular	81.98	68.45
KRG89440	Soybean	cytosol	29.07	66.67
KRH67905	Soybean	plastid	80.23	56.79
HORVU4Hr1G078770.1	Barley	cytosol	66.28	56.16
VIT_17s0000g02630.t01	Wine grape	cytosol	54.07	54.07
VIT_00s0203g00080.t01	Wine grape	cytosol	49.42	48.57

Protein Annotations

EntrezGene:100233009	wikigene:100233009	MapMan:27.8.1	Gene3D:3.90.280.10	UniProt:A4GG72	ProteinID:ABI99467
ProteinID:ABI99467.1	EMBL:AM453575	ProteinID:CAN61194	ProteinID:CAN61194.1	ProteinID:CBI30285	ProteinID:CBI30285.3
EMBL:DQ871592	EMBL:FN595991	GO:GO:0000003	GO:GO:0003674	GO:GO:0003712	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005773
GO:GO:0005886	GO:GO:0006139	GO:GO:0006623	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0008429	GO:GO:0009058	GO:GO:0009628	GO:GO:0009744
GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009910	GO:GO:0009987	GO:GO:0016020
GO:GO:0031982	GO:GO:0048573	GO:GO:0090344	GO:GO:1903506	InterPro:IPR036610	RefSeq:NP_001267931.1
InterPro:PEBP	InterPro:PEBP-like_sf	InterPro:PEBP_euk	PFAM:PF01161	ScanProsite:PS01220	PANTHER:PTHR11362
PANTHER:PTHR11362:SF13	InterPro:Phosphotidylethanolamine-bd_CS	SUPFAM:SSF49777	InterPro:TFL1-like	EntrezGene:TFL1B	wikigene:TFL1B
UniParc:UPI0000F57D63	ArrayExpress:VIT_08s0007g03450	EnsemblPlantsGene:VIT_08s0007g03450	EnsemblPlants:VIT_08s0007g03450.t01	unigene:Vvi.23162	:

Description

TFL1B protein [Source:UniProtKB/TrEMBL;Acc:A4GG72]

Coordinates

chr8:+:17401939..17402979

Molecular Weight (calculated)

19539.5 Da

IEP (calculated)

9.466

GRAVY (calculated)

-0.267

Length

172 amino acids

Sequence
(BLAST)

001: MARILEPLIV GRVIGDVLDP FPPTIKMTVT YHNKQICNGY ELYPSSITVK PRVEVQGGDL RSFFTLVMTD PDVPGPSDPY LREHLHWIVT DIPGTTDATF
101: GREVLSYEIP KPNIGIHRFV FVLFKQKRRQ TVNTPTSRDH FNTRSFAAEN DLGLPVAAVF FNAQRETAAR RR

Best Arabidopsis Sequence Match ( AT5G03840.1 )
(BLAST)

001: MENMGTRVIE PLIMGRVVGD VLDFFTPTTK MNVSYNKKQV SNGHELFPSS VSSKPRVEIH GGDLRSFFTL VMIDPDVPGP SDPFLKEHLH WIVTNIPGTT
101: DATFGKEVVS YELPRPSIGI HRFVFVLFRQ KQRRVIFPNI PSRDHFNTRK FAVEYDLGLP VAAVFFNAQR ETAARKR

Arabidopsis Description

TFL1Protein TERMINAL FLOWER 1 [Source:UniProtKB/Swiss-Prot;Acc:P93003]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.