Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
- plasma membrane 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU4Hr1G007370.1 | |
HORVU4Hr1G031770.1 | |
HORVU4Hr1G043300.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G03840.1 | HORVU4Hr1G007370.1 | AT5G38480.1 | 23613197 |
AT5G03840.1 | HORVU4Hr1G031770.1 | AT5G38480.1 | 23613197 |
AT5G03840.1 | HORVU4Hr1G043300.1 | AT5G38480.1 | 23613197 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G305800.1 | Wheat | cytosol | 67.98 | 78.86 |
TraesCS4A01G409200.1 | Wheat | cytosol | 67.49 | 78.29 |
TraesCS4B01G307600.1 | Wheat | cytosol | 66.01 | 76.57 |
HORVU2Hr1G072750.4 | Barley | cytosol | 64.04 | 75.14 |
Os04t0411400-01 | Rice | cytosol | 62.07 | 72.83 |
Zm00001d025346_P001 | Maize | cytosol | 60.59 | 71.1 |
EES12110 | Sorghum | cytosol | 59.61 | 69.94 |
Zm00001d003804_P001 | Maize | cytosol, extracellular | 59.61 | 68.75 |
GSMUA_Achr3P22720_001 | Banana | cytosol | 58.13 | 67.82 |
GSMUA_Achr3P03070_001 | Banana | cytosol | 57.14 | 67.05 |
GSMUA_Achr10P... | Banana | cytosol | 57.14 | 67.05 |
VIT_08s0007g03450.t01 | Wine grape | cytosol | 56.16 | 66.28 |
GSMUA_Achr8P07730_001 | Banana | cytosol | 56.65 | 65.71 |
HORVU5Hr1G042230.13 | Barley | cytosol | 55.66 | 64.57 |
VIT_06s0080g00290.t01 | Wine grape | cytosol | 54.68 | 64.16 |
GSMUA_Achr10P... | Banana | cytosol | 54.68 | 63.79 |
KRG96189 | Soybean | cytosol | 54.19 | 63.58 |
KRH26623 | Soybean | cytosol | 45.32 | 63.01 |
KRG89440 | Soybean | cytosol | 23.15 | 62.67 |
PGSC0003DMT400090526 | Potato | cytosol | 52.71 | 62.21 |
Solyc09g009560.1.1 | Tomato | cytosol | 52.71 | 62.21 |
PGSC0003DMT400018307 | Potato | cytosol | 44.83 | 61.49 |
KRH30839 | Soybean | cytosol | 52.22 | 61.27 |
CDY31183 | Canola | cytosol | 52.71 | 61.14 |
KRH32734 | Soybean | cytosol | 52.22 | 60.92 |
AT2G27550.1 | Thale cress | cytosol | 52.22 | 60.57 |
Bra000506.1-P | Field mustard | cytosol | 52.22 | 60.57 |
CDX83272 | Canola | cytosol | 52.22 | 60.57 |
CDY51916 | Canola | cytosol | 51.72 | 60.0 |
Bra012010.1-P | Field mustard | cytosol | 51.72 | 60.0 |
Bra034357.1-P | Field mustard | cytosol | 51.72 | 60.0 |
CDX71440 | Canola | cytosol | 51.72 | 60.0 |
CDY04503 | Canola | cytosol | 51.72 | 60.0 |
CDY27416 | Canola | cytosol | 51.72 | 60.0 |
CDY30540 | Canola | cytosol | 51.72 | 60.0 |
Solyc06g074350.2.1 | Tomato | cytosol | 51.23 | 59.43 |
Bra005783.1-P | Field mustard | cytosol | 49.75 | 57.06 |
CDX80890 | Canola | cytosol | 48.77 | 56.9 |
CDX70281 | Canola | cytosol | 49.75 | 56.74 |
Bra009508.1-P | Field mustard | cytosol | 49.75 | 56.74 |
CDX77127 | Canola | cytosol | 32.02 | 56.52 |
AT5G03840.1 | Thale cress | cytosol | 49.26 | 56.5 |
KRH22689 | Soybean | cytosol | 45.81 | 56.02 |
Bra028815.1-P | Field mustard | cytosol | 49.26 | 55.87 |
CDY04899 | Canola | cytosol | 49.26 | 55.87 |
CDY14173 | Canola | cytosol | 49.26 | 55.87 |
CDY41432 | Canola | cytosol | 48.77 | 55.62 |
HORVU7Hr1G024610.1 | Barley | cytosol | 42.36 | 48.04 |
HORVU3Hr1G087100.1 | Barley | cytosol | 42.36 | 48.04 |
HORVU3Hr1G027590.13 | Barley | cytosol | 40.89 | 46.37 |
KRH67905 | Soybean | plastid | 54.19 | 45.27 |
HORVU2Hr1G084540.1 | Barley | cytosol | 37.93 | 44.25 |
HORVU4Hr1G012200.2 | Barley | cytosol | 38.42 | 43.58 |
HORVU4Hr1G090390.1 | Barley | cytosol, nucleus, peroxisome | 36.95 | 42.37 |
HORVU1Hr1G076430.1 | Barley | cytosol | 37.44 | 42.22 |
HORVU2Hr1G108520.1 | Barley | cytosol | 34.98 | 41.28 |
HORVU4Hr1G089690.1 | Barley | cytosol | 26.6 | 40.91 |
HORVU2Hr1G117710.1 | Barley | cytosol | 33.99 | 39.88 |
HORVU3Hr1G002020.1 | Barley | cytosol | 33.5 | 39.08 |
HORVU3Hr1G001000.2 | Barley | cytosol | 36.45 | 38.34 |
HORVU5Hr1G048110.1 | Barley | cytosol | 33.5 | 38.2 |
HORVU2Hr1G023180.2 | Barley | cytosol | 34.48 | 37.63 |
HORVU7Hr1G046660.6 | Barley | cytosol | 33.5 | 37.36 |
Protein Annotations
EnsemblPlants:HORVU4Hr1G078770.1 | EnsemblPlantsGene:HORVU4Hr1G078770 | Gene3D:3.90.280.10 | InterPro:IPR036610 | InterPro:PEBP | InterPro:PEBP-like_sf |
InterPro:PEBP_euk | InterPro:Phosphotidylethanolamine-bd_CS | PANTHER:PTHR11362 | PANTHER:PTHR11362:SF43 | PFAM:PF01161 | ScanProsite:PS01220 |
SEG:seg | SUPFAM:SSF49777 | UniParc:UPI000B47901F | UniProt:A0A287PS79 | MapMan:27.8.1 | : |
Description
No Description!
Coordinates
chrchr4H:-:609002595..609004185
Molecular Weight (calculated)
22694.3 Da
IEP (calculated)
10.338
GRAVY (calculated)
-0.375
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MARMLNPLVL GKVIGEVIDN FNPTVKMTVT YSSDKQVSNG HEFLPSAIVS KPRIQVPGGD MRSFFTLVMT DPDVPGPSDP YLREHLHWIV TDIPGTTDAS
101: FGSEVVSYES PKPNIGIHRF IFVLFKQKKR QAVNPRSASN RDCFNTQPLR RRERPRPPGR RRLLQRAAGD SRAPPLTAEA ISQLNTCSLA SHSTSLPCVH
201: CFW
101: FGSEVVSYES PKPNIGIHRF IFVLFKQKKR QAVNPRSASN RDCFNTQPLR RRERPRPPGR RRLLQRAAGD SRAPPLTAEA ISQLNTCSLA SHSTSLPCVH
201: CFW
001: MARISSDPLM VGRVIGDVVD NCLQAVKMTV TYNSDKQVYN GHELFPSVVT YKPKVEVHGG DMRSFFTLVM TDPDVPGPSD PYLREHLHWI VTDIPGTTDV
101: SFGKEIIGYE MPRPNIGIHR FVYLLFKQTR RGSVVSVPSY RDQFNTREFA HENDLGLPVA AVFFNCQRET AARRR
101: SFGKEIIGYE MPRPNIGIHR FVYLLFKQTR RGSVVSVPSY RDQFNTREFA HENDLGLPVA AVFFNCQRET AARRR
Arabidopsis Description
CENProtein CENTRORADIALIS-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNV5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.