Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005783.1-P | Field mustard | cytosol | 96.55 | 94.92 |
| AT5G03840.1 | Thale cress | cytosol | 94.83 | 93.22 |
| CDY14173 | Canola | cytosol | 90.8 | 88.27 |
| CDY04899 | Canola | cytosol | 90.8 | 88.27 |
| CDY41432 | Canola | cytosol | 86.21 | 84.27 |
| CDX70281 | Canola | cytosol | 85.06 | 83.15 |
| KRG96189 | Soybean | cytosol | 74.14 | 74.57 |
| VIT_08s0007g03450.t01 | Wine grape | cytosol | 73.56 | 74.42 |
| CDX77127 | Canola | cytosol | 48.28 | 73.04 |
| EES16646 | Sorghum | cytosol | 71.84 | 72.25 |
| Zm00001d050649_P001 | Maize | cytosol | 71.26 | 71.68 |
| EES09271 | Sorghum | cytosol | 71.26 | 71.68 |
| Os11t0152500-00 | Rice | cytosol | 71.26 | 71.68 |
| PGSC0003DMT400090526 | Potato | cytosol | 70.69 | 71.51 |
| Solyc09g009560.1.1 | Tomato | cytosol | 70.69 | 71.51 |
| GSMUA_Achr3P03070_001 | Banana | cytosol | 70.69 | 71.1 |
| TraesCS5A01G128600.1 | Wheat | cytosol | 70.11 | 70.52 |
| Zm00001d023420_P001 | Maize | cytosol | 70.11 | 70.52 |
| EES06907 | Sorghum | cytosol | 70.11 | 70.52 |
| Os04t0411400-01 | Rice | cytosol | 70.11 | 70.52 |
| TraesCS5D01G136300.1 | Wheat | cytosol | 70.11 | 70.52 |
| TraesCS5B01G127600.1 | Wheat | cytosol | 70.11 | 70.52 |
| Os02t0531600-01 | Rice | cytosol | 69.54 | 69.94 |
| TraesCS2D01G292000.1 | Wheat | cytosol | 69.54 | 69.94 |
| Os12t0152000-00 | Rice | cytosol, extracellular | 69.54 | 69.94 |
| HORVU2Hr1G072750.4 | Barley | cytosol | 68.97 | 69.36 |
| TraesCS2B01G310700.1 | Wheat | cytosol | 68.97 | 69.36 |
| TraesCSU01G202000.1 | Wheat | cytosol | 68.97 | 69.36 |
| GSMUA_Achr8P07730_001 | Banana | cytosol | 69.54 | 69.14 |
| CDY30540 | Canola | cytosol | 69.54 | 69.14 |
| CDY51916 | Canola | cytosol | 69.54 | 69.14 |
| CDY27416 | Canola | cytosol | 69.54 | 69.14 |
| CDX83272 | Canola | cytosol | 69.54 | 69.14 |
| KRH32734 | Soybean | cytosol | 68.39 | 68.39 |
| GSMUA_Achr3P22720_001 | Banana | cytosol | 68.39 | 68.39 |
| CDY31183 | Canola | cytosol | 68.39 | 68.0 |
| TraesCS4D01G305800.1 | Wheat | cytosol | 68.39 | 68.0 |
| CDY04503 | Canola | cytosol | 68.39 | 68.0 |
| HORVU5Hr1G042230.13 | Barley | cytosol | 68.39 | 68.0 |
| Zm00001d052537_P001 | Maize | cytosol | 68.97 | 67.8 |
| EES12110 | Sorghum | cytosol | 67.24 | 67.63 |
| TraesCS4A01G409200.1 | Wheat | cytosol | 67.82 | 67.43 |
| CDX71440 | Canola | cytosol | 67.82 | 67.43 |
| TraesCS4B01G307600.1 | Wheat | cytosol | 67.82 | 67.43 |
| GSMUA_Achr10P... | Banana | cytosol | 66.67 | 67.05 |
| KRH30839 | Soybean | cytosol | 66.67 | 67.05 |
| KRG89440 | Soybean | cytosol | 28.74 | 66.67 |
| Zm00001d003804_P001 | Maize | cytosol, extracellular | 67.24 | 66.48 |
| Zm00001d025346_P001 | Maize | cytosol | 66.09 | 66.47 |
| GSMUA_Achr10P... | Banana | cytosol | 66.09 | 66.09 |
| Zm00001d044705_P001 | Maize | extracellular | 71.26 | 60.19 |
| CDY16409 | Canola | cytosol | 56.32 | 56.0 |
| CDY60941 | Canola | cytosol | 56.32 | 56.0 |
| CDY07452 | Canola | cytosol | 53.45 | 53.14 |
| CDY02016 | Canola | cytosol | 53.45 | 53.14 |
| CDX87561 | Canola | cytosol | 54.02 | 53.11 |
| KRH67905 | Soybean | plastid | 72.99 | 52.26 |
| CDY00248 | Canola | cytosol | 59.77 | 50.24 |
| CDX86931 | Canola | cytosol | 59.77 | 50.24 |
| CDY21719 | Canola | cytosol | 48.85 | 49.13 |
| CDX81861 | Canola | cytosol | 48.85 | 49.13 |
| HORVU4Hr1G078770.1 | Barley | cytosol | 56.9 | 48.77 |
| CDY60777 | Canola | cytosol | 47.7 | 47.7 |
| CDY26185 | Canola | cytosol | 47.13 | 47.4 |
| CDY39282 | Canola | cytosol, mitochondrion, nucleus | 31.03 | 46.55 |
| CDY13571 | Canola | cytosol | 50.57 | 43.56 |
| CDY65847 | Canola | cytosol | 23.56 | 28.87 |
Protein Annotations
| MapMan:27.8.1 | Gene3D:3.90.280.10 | EnsemblPlants:CDX80890 | ProteinID:CDX80890 | ProteinID:CDX80890.1 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003712 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009910 | EnsemblPlantsGene:GSBRNA2T00134290001 | InterPro:IPR036610 | InterPro:PEBP | InterPro:PEBP-like_sf | InterPro:PEBP_euk |
| PFAM:PF01161 | ScanProsite:PS01220 | PANTHER:PTHR11362 | PANTHER:PTHR11362:SF13 | InterPro:Phosphotidylethanolamine-bd_CS | SUPFAM:SSF49777 |
| InterPro:TFL1-like | UniParc:UPI0004EE4A08 | : | : | : | : |
Description
BnaC03g01440D
Coordinates
chrLK031823:-:673249..674528
Molecular Weight (calculated)
19821.0 Da
IEP (calculated)
10.132
GRAVY (calculated)
-0.168
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MGERVIEPLI MGRVVGDVLD FFTPTIKMNV SYNMKQVSNS HELFPSSVSS KPRVEIHGGD LRSFFTLVMI DPDVPGPSDP FLKEHLHWIV TNIPGTTDAT
101: FGKEVVSYEL PRPSIGIHRF VFALFKQKQR RVIFPNIPSR DNFNTRKFAI EYDLGLPVAA VFFNAQRETA ARRR
101: FGKEVVSYEL PRPSIGIHRF VFALFKQKQR RVIFPNIPSR DNFNTRKFAI EYDLGLPVAA VFFNAQRETA ARRR
001: MENMGTRVIE PLIMGRVVGD VLDFFTPTTK MNVSYNKKQV SNGHELFPSS VSSKPRVEIH GGDLRSFFTL VMIDPDVPGP SDPFLKEHLH WIVTNIPGTT
101: DATFGKEVVS YELPRPSIGI HRFVFVLFRQ KQRRVIFPNI PSRDHFNTRK FAVEYDLGLP VAAVFFNAQR ETAARKR
101: DATFGKEVVS YELPRPSIGI HRFVFVLFRQ KQRRVIFPNI PSRDHFNTRK FAVEYDLGLP VAAVFFNAQR ETAARKR
Arabidopsis Description
TFL1Protein TERMINAL FLOWER 1 [Source:UniProtKB/Swiss-Prot;Acc:P93003]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.