Factsheet for Os12t0152000-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 18372294

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0710800-01
Os11t0546900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03840.1	Os03t0710800-01	AT5G38480.1	23613197
AT5G03840.1	Os11t0546900-01	AT5G38480.1	23613197

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0152500-00	Rice	cytosol	92.49	92.49
EES16646	Sorghum	cytosol	92.49	92.49
Zm00001d023420_P001	Maize	cytosol	91.33	91.33
EES09271	Sorghum	cytosol	90.75	90.75
TraesCS5B01G127600.1	Wheat	cytosol	89.6	89.6
TraesCS5D01G136300.1	Wheat	cytosol	89.6	89.6
TraesCS5A01G128600.1	Wheat	cytosol	89.6	89.6
HORVU5Hr1G042230.13	Barley	cytosol	87.86	86.86
Os04t0411400-01	Rice	cytosol	85.55	85.55
Zm00001d052537_P001	Maize	cytosol	87.28	85.31
Os02t0531600-01	Rice	cytosol	82.08	82.08
VIT_08s0007g03450.t01	Wine grape	cytosol	79.19	79.65
PGSC0003DMT400090526	Potato	cytosol	78.61	79.07
KRG96189	Soybean	cytosol	78.61	78.61
Solyc09g009560.1.1	Tomato	cytosol	77.46	77.91
PGSC0003DMT400018307	Potato	cytosol	65.9	77.03
VIT_06s0080g00290.t01	Wine grape	cytosol	76.88	76.88
Zm00001d044705_P001	Maize	extracellular	91.33	76.7
CDX77127	Canola	cytosol	50.87	76.52
AT2G27550.1	Thale cress	cytosol	75.72	74.86
CDY51916	Canola	cytosol	75.14	74.29
CDY30540	Canola	cytosol	75.14	74.29
CDY27416	Canola	cytosol	75.14	74.29
Bra034357.1-P	Field mustard	cytosol	75.14	74.29
CDY04503	Canola	cytosol	74.57	73.71
Bra012010.1-P	Field mustard	cytosol	74.57	73.71
KRH26623	Soybean	cytosol	61.85	73.29
Solyc06g074350.2.1	Tomato	cytosol	73.99	73.14
CDX71440	Canola	cytosol	73.99	73.14
KRH32734	Soybean	cytosol	73.41	72.99
KRH30839	Soybean	cytosol	72.83	72.83
CDX83272	Canola	cytosol	73.41	72.57
Bra000506.1-P	Field mustard	cytosol	73.41	72.57
CDY31183	Canola	cytosol	72.83	72.0
CDX80890	Canola	cytosol	69.94	69.54
AT5G03840.1	Thale cress	cytosol	71.1	69.49
KRG89440	Soybean	cytosol	30.06	69.33
Bra005783.1-P	Field mustard	cytosol	70.52	68.93
Bra028815.1-P	Field mustard	cytosol	70.52	68.16
CDY14173	Canola	cytosol	70.52	68.16
CDY04899	Canola	cytosol	70.52	68.16
Bra009508.1-P	Field mustard	cytosol	69.36	67.42
CDX70281	Canola	cytosol	69.36	67.42
CDY41432	Canola	cytosol	68.79	66.85
KRH22689	Soybean	cytosol	63.01	65.66
Os06t0157700-01	Rice	nucleus	62.43	60.34
Os06t0157500-01	Rice	nucleus	58.38	56.74
KRH67905	Soybean	plastid	78.61	55.97
Os06t0552900-00	Rice	extracellular	52.02	52.02
Os01t0111600-01	Rice	cytosol	52.02	51.72
Os04t0488400-01	Rice	cytosol	52.02	51.72
Os05t0518000-00	Rice	cytosol	51.45	51.15
Os06t0498800-01	Rice	cytosol, extracellular, plastid	51.45	50.57
Os01t0202700-00	Rice	cytosol	50.87	50.0
Os11t0293800-00	Rice	cytosol	53.18	48.42
Os09t0513500-00	Rice	cytosol, extracellular	27.75	47.52
Os12t0232300-00	Rice	cytosol	47.98	46.89
Os01t0748800-00	Rice	cytosol	23.7	45.56
Os01t0218500-02	Rice	cytosol, plastid	57.8	36.23
Os02t0232300-00	Rice	cytosol	35.26	32.97

Protein Annotations

MapMan:27.8.1	Gene3D:3.90.280.10	EntrezGene:4351520	ProteinID:ABA95827.1	ProteinID:BAF29191.1	ProteinID:BAT15919.1
ProteinID:EAZ19669.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003712	GO:GO:0005488	GO:GO:0006139
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0008429	GO:GO:0009058
GO:GO:0009791	GO:GO:0009908	GO:GO:0009910	GO:GO:0009987	GO:GO:1903506	InterPro:IPR036610
EnsemblPlantsGene:Os12g0152000	EnsemblPlants:Os12t0152000-00	InterPro:PEBP	InterPro:PEBP-like_sf	InterPro:PEBP_euk	PFAM:PF01161
ScanProsite:PS01220	PANTHER:PTHR11362	PANTHER:PTHR11362:SF13	InterPro:Phosphotidylethanolamine-bd_CS	UniProt:Q2QXL9	SUPFAM:SSF49777
InterPro:TFL1-like	UniParc:UPI00000A4F00	RefSeq:XP_015618522.1	:	:	:

Description

RICE TERMINAL FLOWER 1/CENTRORADIALIS HOMOLOG 3Similar to Terminal flower 1-like protein. (Os12t0152000-00)

Coordinates

chr12:-:2565213..2566562

Molecular Weight (calculated)

19600.4 Da

IEP (calculated)

9.038

GRAVY (calculated)

-0.266

Length

173 amino acids

Sequence
(BLAST)

001: MSRSVEPLVV GRVIGEVIDS FNPCTKMIVT YNSNKLVFNG HEFYPSAVVS KPRVEVQGGD MRSFFTLVMT DPDVPGPSDP YLREHLHWIV TDIPGTTDAS
101: FGREIISYES PKPSIGIHRF VFVLFKQKRR QAVVVPSSRD HFNTRQFAEE NELGLPVAAV YFNAQRETAA RRR

Best Arabidopsis Sequence Match ( AT2G27550.1 )
(BLAST)

001: MARISSDPLM VGRVIGDVVD NCLQAVKMTV TYNSDKQVYN GHELFPSVVT YKPKVEVHGG DMRSFFTLVM TDPDVPGPSD PYLREHLHWI VTDIPGTTDV
101: SFGKEIIGYE MPRPNIGIHR FVYLLFKQTR RGSVVSVPSY RDQFNTREFA HENDLGLPVA AVFFNCQRET AARRR

Arabidopsis Description

CENProtein CENTRORADIALIS-like [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.