CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69181
CDX70281
CDX72563
CDX75538
CDX80890
CDX87561
CDY02016
CDY04899
CDY13571
CDY14173
CDY24826
CDY41432
CDY47041
CDY62049
CDY65847

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	CDX87561	AT4G20370.1	19656342
AT4G35900.1	CDY02016	AT4G20370.1	19656342
AT4G35900.1	CDY13571	AT4G20370.1	19656342
AT4G35900.1	CDY65847	AT4G20370.1	19656342
AT4G35900.1	CDX69181	AT4G35900.1	16099979
AT4G35900.1	CDX72563	AT4G35900.1	16099979
AT4G35900.1	CDX75538	AT4G35900.1	16099979
AT4G35900.1	CDY24826	AT4G35900.1	16099979
AT4G35900.1	CDY47041	AT4G35900.1	16099979
AT4G35900.1	CDY62049	AT4G35900.1	16099979
AT4G35900.1	CDX70281	AT5G03840.1	16099980
AT4G35900.1	CDX80890	AT5G03840.1	16099980
AT4G35900.1	CDY04899	AT5G03840.1	16099980
AT4G35900.1	CDY14173	AT5G03840.1	16099980
AT4G35900.1	CDY41432	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24826	Canola	nucleus	85.93	93.0
CDY47041	Canola	nucleus	68.44	69.5
CDX72563	Canola	nucleus	70.72	66.19
AT4G35900.1	Thale cress	nucleus	68.06	62.81
CDX69181	Canola	nucleus	64.26	62.59
CDX75538	Canola	nucleus	58.56	58.78
CDY30347	Canola	nucleus	39.16	57.22
CDY26829	Canola	nucleus	38.78	56.04
GSMUA_Achr1P02630_001	Banana	nucleus	8.37	46.81
PGSC0003DMT400009393	Potato	nucleus	29.66	46.43
Solyc02g083520.2.1	Tomato	nucleus, plastid	38.02	46.08
CDY24375	Canola	nucleus	39.92	45.45
VIT_00s0349g00050.t01	Wine grape	nucleus	31.18	45.3
KRH28841	Soybean	nucleus	20.53	42.86
KRH76618	Soybean	nucleus	28.9	42.22
PGSC0003DMT400061403	Potato	nucleus	33.46	38.77
GSMUA_Achr5P11470_001	Banana	nucleus	29.66	37.5
GSMUA_Achr9P21040_001	Banana	nucleus	27.38	37.11
GSMUA_Achr1P02640_001	Banana	nucleus	20.91	36.91
GSMUA_Achr4P29580_001	Banana	nucleus	27.0	36.6
GSMUA_Achr5P17850_001	Banana	nucleus	31.94	34.71
GSMUA_Achr4P05090_001	Banana	nucleus	22.43	34.3
Solyc02g061990.2.1	Tomato	nucleus	22.81	33.71
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	31.94	31.94
GSMUA_Achr2P03490_001	Banana	nucleus	24.71	31.86
GSMUA_Achr9P24090_001	Banana	nucleus	20.91	31.07
GSMUA_Achr2P11200_001	Banana	nucleus	27.76	29.92

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078J6E7	UniProt:A0A078J6E7	EnsemblPlants:CDY62049	ProteinID:CDY62049
ProteinID:CDY62049.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00035884001	InterPro:IPR004827
PFAM:PF00170	ScanProsite:PS00036	PANTHER:PTHR22952	PANTHER:PTHR22952:SF211	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0004EDB96C	InterPro:bZIP	SEG:seg	:	:	:

Description

BnaC03g76870DBnaC03g76870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6E7]

Coordinates

chrLK034087:-:15223..16553

Molecular Weight (calculated)

29464.6 Da

IEP (calculated)

11.051

GRAVY (calculated)

-0.906

Length

263 amino acids

Sequence
(BLAST)

001: MLSSAKHQRK HRVSAPNKNK ILNKVPSISS SSSPSHSQVQ KRSLITMEEV WKDINLASIH HLNHHSQHPQ HNHEPRFRSH NHQNQNPNSI FQDFLNRPLN
101: LEPTIPTSLS GDATTGTALF GSSPLAPPAT VLSLNSSACF EFLDNQDPLV TSNSNLHSHN HLTNVRSAGT PFEALVTSTC FGKKRGQESN EGSGNRHHKR
201: MIKNRESAAR SRARKQEYEL ELKVAHLKAE NARLKRQQDQ LKMAAANQQP KKNTLQRSSS ALF

Best Arabidopsis Sequence Match ( AT4G35900.1 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.