Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s0349g00050.t01 | |
| VIT_08s0007g03450.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35900.1 | VIT_00s0349g00050.t01 | AT4G35900.1 | 16099979 |
| AT4G35900.1 | VIT_08s0007g03450.t01 | AT5G03840.1 | 16099980 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P02630_001 | Banana | nucleus | 16.57 | 63.83 |
| PGSC0003DMT400009393 | Potato | nucleus | 42.54 | 45.83 |
| VIT_18s0001g14890.t01 | Wine grape | nucleus | 51.93 | 43.93 |
| CDY30347 | Canola | nucleus | 41.99 | 42.22 |
| KRH28841 | Soybean | nucleus | 29.28 | 42.06 |
| CDY26829 | Canola | nucleus | 41.44 | 41.21 |
| KRH76618 | Soybean | nucleus | 40.88 | 41.11 |
| Solyc02g083520.2.1 | Tomato | nucleus, plastid | 45.86 | 38.25 |
| PGSC0003DMT400061403 | Potato | nucleus | 45.3 | 36.12 |
| GSMUA_Achr5P11470_001 | Banana | nucleus | 40.88 | 35.58 |
| GSMUA_Achr9P21040_001 | Banana | nucleus | 37.57 | 35.05 |
| Bra037251.1-P | Field mustard | nucleus | 25.97 | 33.57 |
| CDY24375 | Canola | nucleus | 40.88 | 32.03 |
| CDY24826 | Canola | nucleus | 42.54 | 31.69 |
| CDX69181 | Canola | nucleus | 46.96 | 31.48 |
| CDY62049 | Canola | nucleus | 45.3 | 31.18 |
| GSMUA_Achr4P29580_001 | Banana | nucleus | 33.15 | 30.93 |
| AT4G35900.1 | Thale cress | nucleus | 47.51 | 30.18 |
| CDY47041 | Canola | nucleus | 42.54 | 29.73 |
| Bra017735.1-P | Field mustard | nucleus | 42.54 | 29.73 |
| CDX72563 | Canola | nucleus | 45.86 | 29.54 |
| GSMUA_Achr4P05090_001 | Banana | nucleus | 27.62 | 29.07 |
| GSMUA_Achr2P11200_001 | Banana | nucleus | 37.57 | 27.87 |
| CDX75538 | Canola | nucleus | 39.78 | 27.48 |
| GSMUA_Achr5P17850_001 | Banana | nucleus | 36.46 | 27.27 |
| AT2G17770.3 | Thale cress | nucleus | 28.73 | 26.67 |
| GSMUA_Achr1P02640_001 | Banana | nucleus | 21.55 | 26.17 |
| GSMUA_Achr5P11220_001 | Banana | nucleus, plastid | 37.57 | 25.86 |
| Bra002090.1-P | Field mustard | nucleus | 25.97 | 25.54 |
| GSMUA_Achr2P03490_001 | Banana | nucleus | 28.73 | 25.49 |
| Solyc02g061990.2.1 | Tomato | nucleus | 24.86 | 25.28 |
| Bra010504.1-P | Field mustard | nucleus | 29.28 | 23.87 |
| GSMUA_Achr9P24090_001 | Banana | nucleus | 22.65 | 23.16 |
| Bra011648.1-P | Field mustard | nucleus | 30.94 | 21.37 |
Protein Annotations
| EntrezGene:100260902 | wikigene:100260902 | MapMan:35.1 | ProteinID:CBI22122 | ProteinID:CBI22122.3 | ncoils:Coil |
| UniProt:E0CU56 | EMBL:FN595236 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EntrezGene:LOC100260902 | wikigene:LOC100260902 |
| PANTHER:PTHR22952 | PANTHER:PTHR22952:SF211 | UniParc:UPI0001BE2089 | ArrayExpress:VIT_00s0349g00050 | EnsemblPlantsGene:VIT_00s0349g00050 | EnsemblPlants:VIT_00s0349g00050.t01 |
| RefSeq:XP_003635259 | RefSeq:XP_003635259.1 | : | : | : | : |
Description
No Description!
Coordinates
chrUn:-:24950558..24951511
Molecular Weight (calculated)
20404.9 Da
IEP (calculated)
7.137
GRAVY (calculated)
-0.713
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVWKDINL ASLHDHPSRE DLSVLPRPQN PHASFRGVIL QDFLARPFNK EPPTSVASLD QSTVTEARIY GSLPPPPATV LSLNSGPEFH FLESSHPARP
101: HSHLVQHNPI SNKRFSESDN NSCDRRHKQL AIAYTNELEL EVAHLMEENA RLKRQQEQLT SATAAQLPKK NTLHRTSTAP F
101: HSHLVQHNPI SNKRFSESDN NSCDRRHKQL AIAYTNELEL EVAHLMEENA RLKRQQEQLT SATAAQLPKK NTLHRTSTAP F
001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
Arabidopsis Description
FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.