Factsheet for PGSC0003DMT400009393

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009393
PGSC0003DMT400041725
PGSC0003DMT400041726
PGSC0003DMT400060057
PGSC0003DMT400061403
PGSC0003DMT400090526

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	PGSC0003DMT400041725	AT4G20370.1	19656342
AT4G35900.1	PGSC0003DMT400041726	AT4G20370.1	19656342
AT4G35900.1	PGSC0003DMT400060057	AT4G20370.1	19656342
AT4G35900.1	PGSC0003DMT400009393	AT4G35900.1	16099979
AT4G35900.1	PGSC0003DMT400061403	AT4G35900.1	16099979
AT4G35900.1	PGSC0003DMT400090526	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g083520.2.1	Tomato	nucleus, plastid	80.95	62.67
GSMUA_Achr1P02630_001	Banana	nucleus	16.67	59.57
VIT_00s0349g00050.t01	Wine grape	nucleus	45.83	42.54
KRH28841	Soybean	nucleus	26.79	35.71
PGSC0003DMT400061403	Potato	nucleus	48.21	35.68
KRH76618	Soybean	nucleus	36.31	33.89
CDY30347	Canola	nucleus	33.33	31.11
CDY26829	Canola	nucleus	32.14	29.67
CDY62049	Canola	nucleus	46.43	29.66
CDY24826	Canola	nucleus	41.07	28.4
CDY47041	Canola	nucleus	43.45	28.19
Bra017735.1-P	Field mustard	nucleus	43.45	28.19
GSMUA_Achr5P11470_001	Banana	nucleus	34.52	27.88
CDX69181	Canola	nucleus	44.64	27.78
AT4G35900.1	Thale cress	nucleus	47.02	27.72
GSMUA_Achr9P21040_001	Banana	nucleus	31.55	27.32
CDX72563	Canola	nucleus	45.24	27.05
GSMUA_Achr5P17850_001	Banana	nucleus	38.1	26.45
CDY24375	Canola	nucleus	36.31	26.41
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	39.29	25.1
GSMUA_Achr4P29580_001	Banana	nucleus	27.98	24.23
CDX75538	Canola	nucleus	36.9	23.66
GSMUA_Achr2P11200_001	Banana	nucleus	32.74	22.54
GSMUA_Achr4P05090_001	Banana	nucleus	22.62	22.09
GSMUA_Achr2P03490_001	Banana	nucleus	26.79	22.06
Bra037251.1-P	Field mustard	nucleus	17.86	21.43
Bra010504.1-P	Field mustard	nucleus	27.38	20.72
Bra002090.1-P	Field mustard	nucleus	22.62	20.65
AT2G17770.3	Thale cress	nucleus	23.81	20.51
GSMUA_Achr9P24090_001	Banana	nucleus	20.83	19.77
GSMUA_Achr1P02640_001	Banana	nucleus	17.26	19.46
Bra011648.1-P	Field mustard	nucleus	27.98	17.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400009393	EnsemblPlantsGene:PGSC0003DMG400003652	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	ncoils:Coil	PANTHER:PTHR22952
PANTHER:PTHR22952:SF211	PGSC:PGSC0003DMG400003652	SEG:seg	UniParc:UPI00029481CA	UniProt:M0ZW65	MapMan:35.2

Description

Self-pruning G-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003652]

Coordinates

chr2:+:39091264..39092172

Molecular Weight (calculated)

18859.9 Da

IEP (calculated)

7.506

GRAVY (calculated)

-0.680

Length

168 amino acids

Sequence
(BLAST)

001: MWSSSRSSSS SSSSHSPFSP RLKTMEEVWK DINLSSLQDH TTNYSKDHQH HLHDHNHQGA NFGGMILQEF LARPFANESS PAAAASPVSA TTMLNLNSVP
101: ELHFFDNPLR QNSILHQPNA YLNELETEVA HLVEENARLK KQQQQLRLAA AIQVPKKNSL HRTSTAPF

Best Arabidopsis Sequence Match ( AT4G35900.1 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.