Factsheet for PGSC0003DMT400041726

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009393
PGSC0003DMT400050389
PGSC0003DMT400061403
PGSC0003DMT400062153

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20370.1	PGSC0003DMT400009393	AT4G35900.1	19656342
AT4G20370.1	PGSC0003DMT400061403	AT4G35900.1	19656342
AT4G20370.1	PGSC0003DMT400050389	AT5G38480.1	23613197
AT4G20370.1	PGSC0003DMT400062153	AT5G38480.1	23613197

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008640.1.1	Tomato	cytosol	90.23	90.23
PGSC0003DMT400041725	Potato	cytosol	72.41	71.19
PGSC0003DMT400060057	Potato	cytosol	70.11	70.52
Bra004117.1-P	Field mustard	cytosol	68.39	68.0
CDY07452	Canola	cytosol	68.39	68.0
Bra015710.1-P	Field mustard	mitochondrion	59.77	67.53
AT4G20370.1	Thale cress	cytosol	67.82	67.43
CDY16409	Canola	cytosol	67.82	67.43
CDY60941	Canola	cytosol	67.24	66.86
CDY02016	Canola	cytosol	67.24	66.86
Bra022475.1-P	Field mustard	cytosol	67.24	66.86
KRG94768	Soybean	cytosol	66.67	66.29
KRH06761	Soybean	cytosol	66.09	65.71
CDX87561	Canola	cytosol	66.09	64.97
KRH46899	Soybean	cytosol	64.94	64.57
Zm00001d017134_P001	Maize	cytosol	63.22	63.22
EES07110	Sorghum	cytosol	63.22	63.22
GSMUA_Achr2P20900_001	Banana	cytosol	62.07	62.07
GSMUA_Achr9P07900_001	Banana	cytosol	62.07	62.07
GSMUA_Achr3P21510_001	Banana	cytosol	61.49	61.85
KRH01790	Soybean	cytosol	62.07	61.36
Zm00001d025737_P001	Maize	cytosol	61.49	61.14
OQU83339	Sorghum	cytosol	62.07	61.02
EES11032	Sorghum	cytosol	60.92	60.92
GSMUA_Achr3P02730_001	Banana	cytosol	62.64	60.89
GSMUA_Achr1P17050_001	Banana	cytosol	59.77	60.12
KRH01791	Soybean	cytosol	59.77	60.12
GSMUA_Achr10P...	Banana	cytosol	60.92	59.89
Os04t0488400-01	Rice	cytosol	59.77	59.77
CDY39282	Canola	cytosol, mitochondrion, nucleus	39.66	59.48
Zm00001d004630_P001	Maize	cytosol	60.34	59.32
KRH46900	Soybean	cytosol	29.89	59.09
GSMUA_Achr2P05870_001	Banana	cytosol	62.64	58.92
TraesCS6D01G197100.1	Wheat	cytosol	58.62	58.62
TraesCS6A01G214400.1	Wheat	cytosol	58.62	58.62
TraesCS6B01G244400.1	Wheat	cytosol	58.05	58.05
TraesCS2D01G538000.1	Wheat	cytosol	50.57	57.89
KXG35998	Sorghum	cytosol	59.2	57.87
TraesCS5B01G296600.1	Wheat	cytosol	59.2	57.87
TraesCS2B01G365300.1	Wheat	cytosol	57.47	57.47
TraesCS2A01G347000.1	Wheat	cytosol	57.47	57.47
TraesCS2D01G345700.1	Wheat	cytosol	57.47	57.47
TraesCS2A01G485000.1	Wheat	cytosol	56.32	57.31
TraesCS5D01G304400.1	Wheat	cytosol	58.62	57.3
TraesCS2D01G485100.1	Wheat	cytosol	56.9	57.23
TraesCS2B01G511400.1	Wheat	cytosol	56.32	56.98
HORVU3Hr1G002020.1	Barley	cytosol	56.9	56.9
TraesCS2B01G567400.1	Wheat	cytosol	56.32	56.65
TraesCS2B01G567200.1	Wheat	cytosol	56.32	56.65
TraesCS3A01G013100.1	Wheat	cytosol	56.9	56.57
TraesCS3D01G011500.1	Wheat	cytosol	56.9	56.57
Zm00001d024023_P001	Maize	cytosol	56.9	56.57
HORVU2Hr1G108520.1	Barley	cytosol	55.75	56.4
HORVU2Hr1G084540.1	Barley	cytosol	56.32	56.32
TraesCS2A01G536700.1	Wheat	cytosol	55.75	56.07
TraesCS2A01G536900.1	Wheat	cytosol	55.75	56.07
TraesCS2A01G536600.1	Wheat	cytosol	55.75	56.07
TraesCS2D01G538100.1	Wheat	cytosol	55.75	56.07
TraesCS5B01G020300.1	Wheat	cytosol	56.32	56.0
TraesCS3D01G011600.1	Wheat	cytosol	56.32	56.0
Os12t0232300-00	Rice	cytosol	56.9	55.93
TraesCS4D01G072300.1	Wheat	cytosol	57.47	55.87
Os11t0293800-00	Rice	cytosol	60.92	55.79
HORVU2Hr1G117710.1	Barley	cytosol	55.17	55.49
CDY13571	Canola	cytosol	64.37	55.45
TraesCS3D01G011700.1	Wheat	cytosol	55.75	55.43
TraesCS3B01G015200.1	Wheat	cytosol	55.75	55.43
TraesCS4B01G073800.1	Wheat	cytosol	56.9	55.31
HORVU4Hr1G012200.2	Barley	cytosol	56.9	55.31
TraesCS3B01G015600.2	Wheat	cytosol	55.17	54.86
EES16923	Sorghum	cytosol	55.75	54.8
Os09t0513500-00	Rice	cytosol, extracellular	31.61	54.46
TraesCS3B01G015800.1	Wheat	cytosol	54.6	54.29
Zm00001d003226_P001	Maize	cytosol	48.28	54.19
TraesCS5D01G159500.1	Wheat	cytosol	55.17	53.93
TraesCS5B01G152800.1	Wheat	cytosol	55.17	53.93
HORVU4Hr1G089690.1	Barley	cytosol	40.8	53.79
TraesCS3B01G015700.1	Wheat	cytosol	54.02	53.71
TraesCSU01G045800.1	Wheat	cytosol	54.02	53.71
AT1G65480.2	Thale cress	cytosol	67.24	53.42
TraesCS5A01G154600.1	Wheat	cytosol	54.6	53.37
HORVU5Hr1G048110.1	Barley	cytosol	54.6	53.37
PGSC0003DMT400018307	Potato	cytosol	44.83	52.7
KRH01789	Soybean	cytosol	39.08	50.75
PGSC0003DMT400090526	Potato	cytosol	48.85	49.42
TraesCS5A01G297300.1	Wheat	cytosol	57.47	49.02
PGSC0003DMT400030575	Potato	cytosol	48.28	48.0
PGSC0003DMT400014409	Potato	cytosol	47.7	47.98
PGSC0003DMT400037143	Potato	cytosol	47.7	47.43
Zm00001d006116_P001	Maize	cytosol	58.62	46.79
PGSC0003DMT400030582	Potato	cytosol	21.26	41.57
CDY65847	Canola	cytosol	25.86	31.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400041726	EnsemblPlantsGene:PGSC0003DMG400016180	EntrezGene:102606326	Gene3D:3.90.280.10	InterPro:IPR036610	InterPro:PEBP
InterPro:PEBP-like_sf	InterPro:PEBP_euk	PANTHER:PTHR11362	PANTHER:PTHR11362:SF9	PFAM:PF01161	PGSC:PGSC0003DMG400016180
RefSeq:XP_006353263.1	SEG:seg	SUPFAM:SSF49777	UniParc:UPI0002955F78	UniProt:M1BBV6	MapMan:27.8.1

Description

Flowering locus T [Source:PGSC_GENE;Acc:PGSC0003DMG400016180]

Coordinates

chr11:+:3249174..3251562

Molecular Weight (calculated)

20011.9 Da

IEP (calculated)

7.503

GRAVY (calculated)

-0.376

Length

174 amino acids

Sequence
(BLAST)

001: MQRERDTLTL ARVIGDVLDP FTRSINLRVV YNNREVRNGC DLRPSMVINQ PSVEIEGDNL QTFYTLVMVD PDAPTPSNPY HKEYLHWLVT DIPASTGVTF
101: GNEVVSYECP RPTMGIHRLV LVLFRQLRRE IVHAPENRQN FDTRDFAKVY NFGLPVAAVY FNCQRENGTG GRRI

Best Arabidopsis Sequence Match ( AT1G65480.2 )
(BLAST)

001: MQIRNSINMC RGFMPMIQIK EAETKTSKTE TINTEKPPVC SRSKMSINIR DPLIVSRVVG DVLDPFNRSI TLKVTYGQRE VTNGLDLRPS QVQNKPRVEI
101: GGEDLRNFYT LVMVDPDVPS PSNPHLREYL HWLVTDIPAT TGTTFGNEIV CYENPSPTAG IHRVVFILFR QLGRQTVYAP GWRQNFNTRE FAEIYNLGLP
201: VAAVFYNCQR ESGCGGRRL

Arabidopsis Description

FTPEBP (phosphatidylethanolamine-binding protein) family protein [Source:TAIR;Acc:AT1G65480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.