Factsheet for PGSC0003DMT400030575

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030582	Potato	cytosol	48.57	95.51
Solyc01g009560.1.1	Tomato	cytosol	93.14	93.14
PGSC0003DMT400037143	Potato	cytosol	84.57	84.57
KRH09103	Soybean	cytosol	78.86	80.23
KRH38557	Soybean	cytosol	77.71	78.61
VIT_16s0100g00700.t01	Wine grape	cytosol	76.57	77.46
Solyc01g009580.1.1	Tomato	plastid	95.43	75.23
GSMUA_Achr11P...	Banana	cytosol	72.0	72.83
GSMUA_Achr5P20040_001	Banana	cytosol	70.29	71.1
PGSC0003DMT400018307	Potato	cytosol	58.29	68.92
PGSC0003DMT400090526	Potato	cytosol	67.43	68.6
Bra010052.1-P	Field mustard	cytosol	68.57	67.8
AT5G62040.1	Thale cress	cytosol	67.43	66.67
CDX86931	Canola	cytosol	69.14	58.45
CDY00248	Canola	cytosol	68.57	57.97
PGSC0003DMT400060057	Potato	cytosol	53.71	54.34
PGSC0003DMT400014409	Potato	cytosol	51.43	52.02
PGSC0003DMT400041725	Potato	cytosol	50.86	50.28
PGSC0003DMT400041726	Potato	cytosol	48.0	48.28

Protein Annotations

EnsemblPlants:PGSC0003DMT400030575	EnsemblPlantsGene:PGSC0003DMG400011707	EntrezGene:102585036	Gene3D:3.90.280.10	InterPro:IPR036610	InterPro:PEBP
InterPro:PEBP-like_sf	InterPro:PEBP_euk	InterPro:Phosphotidylethanolamine-bd_CS	PANTHER:PTHR11362	PANTHER:PTHR11362:SF22	PFAM:PF01161
PGSC:PGSC0003DMG400011707	RefSeq:XP_006365770.1	ScanProsite:PS01220	SUPFAM:SSF49777	UniParc:UPI0002950C25	UniProt:M1AUF8
MapMan:27.8.1	:	:	:	:	:

Description

CEN 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400011707]

Coordinates

chr1:+:7522637..7524111

Molecular Weight (calculated)

19613.5 Da

IEP (calculated)

9.342

GRAVY (calculated)

-0.322

Length

175 amino acids

Sequence
(BLAST)

001: MSCRDIEPLV VARVIGEVVD SFNPSVKMNV IYNGSKQVFN GHELMPLVIA SKPRVEIGGE DMRSAYTLIM TDPDVPGPSD PYLREHLHWI VTDIPGSTDA
101: SFGREIVSYD SPKPVIGIHR YVFVLYKQNR GRQTVKPPVT RDHFNTRKFA AENGLGSPVA AVYFNAQRET AARRR

Best Arabidopsis Sequence Match ( AT5G62040.1 )
(BLAST)

001: MSREIEPLIV GRVIGDVLEM FNPSVTMRVT FNSNTIVSNG HELAPSLLLS KPRVEIGGQD LRSFFTLIMM DPDAPSPSNP YMREYLHWMV TDIPGTTDAS
101: FGREIVRYET PKPVAGIHRY VFALFKQRGR QAVKAAPETR ECFNTNAFSS YFGLSQPVAA VYFNAQRETA PRRRPSY

Arabidopsis Description

BFTProtein BROTHER of FT and TFL 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.