Factsheet for GSMUA_Achr3P21510_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P02630_001
GSMUA_Achr1P02640_001
GSMUA_Achr2P03490_001
GSMUA_Achr2P11200_001
GSMUA_Achr4P05090_001
GSMUA_Achr4P29580_001
GSMUA_Achr5P11220_001
GSMUA_Achr5P11470_001
GSMUA_Achr5P17850_001
GSMUA_Achr5P23090_001
GSMUA_Achr9P21040_001
GSMUA_Achr9P24090_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20370.1	GSMUA_Achr1P02630_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr1P02640_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr2P03490_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr2P11200_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr4P05090_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr4P29580_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P11220_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P11470_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P17850_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr9P21040_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr9P24090_001	AT4G35900.1	19656342
AT4G20370.1	GSMUA_Achr5P23090_001	AT5G38480.1	23613197
AT4G20370.1	GSMUA_AchrUn_...	AT5G38480.1	23613197
AT4G20370.1	GSMUA_AchrUn_...	AT5G38480.1	23613197

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P17050_001	Banana	cytosol	79.19	79.19
GSMUA_Achr9P07900_001	Banana	cytosol	72.83	72.41
GSMUA_Achr2P20900_001	Banana	cytosol	72.83	72.41
KXG35998	Sorghum	cytosol	72.25	70.22
TraesCS5D01G304400.1	Wheat	cytosol	71.68	69.66
Os09t0513500-00	Rice	cytosol, extracellular	40.46	69.31
TraesCS5B01G296600.1	Wheat	cytosol	71.1	69.1
GSMUA_Achr3P02730_001	Banana	cytosol	71.1	68.72
GSMUA_Achr10P...	Banana	cytosol	69.94	68.36
AT4G20370.1	Thale cress	cytosol	67.05	66.29
GSMUA_Achr2P05870_001	Banana	cytosol	70.52	65.95
CDY60941	Canola	cytosol	66.47	65.71
CDY16409	Canola	cytosol	66.47	65.71
Bra022475.1-P	Field mustard	cytosol	66.47	65.71
Bra004117.1-P	Field mustard	cytosol	65.9	65.14
CDY07452	Canola	cytosol	65.9	65.14
GSMUA_Achr10P...	Banana	cytosol	64.16	63.79
PGSC0003DMT400060057	Potato	cytosol	63.58	63.58
KRH06761	Soybean	cytosol	63.58	62.86
Bra015710.1-P	Field mustard	mitochondrion	55.49	62.34
CDX87561	Canola	cytosol	63.58	62.15
Solyc05g055660.1.1	Tomato	cytosol	50.29	62.14
Solyc11g008640.1.1	Tomato	cytosol	62.43	62.07
CDY02016	Canola	cytosol	62.43	61.71
PGSC0003DMT400041726	Potato	cytosol	61.85	61.49
GSMUA_Achr2P19310_001	Banana	cytosol	61.85	61.14
GSMUA_Achr10P...	Banana	cytosol	62.43	61.02
KRG94768	Soybean	cytosol	61.27	60.57
PGSC0003DMT400041725	Potato	cytosol	61.85	60.45
CDY39282	Canola	cytosol, mitochondrion, nucleus	40.46	60.34
TraesCS5A01G297300.1	Wheat	cytosol	71.1	60.29
KRH01790	Soybean	cytosol	61.27	60.23
KRH01791	Soybean	cytosol	60.12	60.12
GSMUA_Achr5P06600_001	Banana	cytosol	60.12	59.43
GSMUA_Achr4P08540_001	Banana	cytosol	61.27	59.22
GSMUA_Achr5P06420_001	Banana	cytosol	59.54	58.86
KRH46899	Soybean	cytosol	59.54	58.86
Solyc05g053850.2.1	Tomato	cytosol	58.96	58.29
Zm00001d006116_P001	Maize	cytosol	72.25	57.34
GSMUA_Achr2P19360_001	Banana	cytosol	57.8	56.5
KRH46900	Soybean	cytosol	27.75	54.55
GSMUA_Achr11P...	Banana	cytosol	54.34	54.34
GSMUA_Achr5P20040_001	Banana	cytosol	53.18	53.18
GSMUA_Achr3P03070_001	Banana	cytosol	52.6	52.6
GSMUA_Achr8P07730_001	Banana	cytosol	52.02	51.43
GSMUA_Achr3P22720_001	Banana	cytosol	51.45	51.15
GSMUA_Achr10P...	Banana	cytosol	51.45	51.15
AT1G65480.2	Thale cress	cytosol	64.74	51.14
KRH01789	Soybean	cytosol	39.31	50.75
CDY13571	Canola	cytosol	58.96	50.49
Solyc11g008660.1.1	Tomato	cytosol	37.57	49.62
GSMUA_Achr10P...	Banana	cytosol	49.13	49.13
GSMUA_Achr6P09410_001	Banana	cytosol	47.4	47.67
GSMUA_AchrUn_...	Banana	cytosol	47.4	47.67
GSMUA_Achr3P20880_001	Banana	cytosol	46.24	46.51
CDY65847	Canola	cytosol	26.59	32.39

Protein Annotations

EnsemblPlants:GSMUA_Achr3P21510_001	EnsemblPlants:GSMUA_Achr3T21510_001	EnsemblPlantsGene:GSMUA_Achr3G21510_001	Gene3D:3.90.280.10	InterPro:IPR036610	InterPro:PEBP
InterPro:PEBP-like_sf	InterPro:PEBP_euk	PANTHER:PTHR11362	PANTHER:PTHR11362:SF23	PFAM:PF01161	SEG:seg
SUPFAM:SSF49777	UniParc:UPI000296B6FB	UniProt:M0SGL7	MapMan:27.8.1	:	:

Description

Protein TWIN SISTER of FT [Source:GMGC_GENE;Acc:GSMUA_Achr3G21510_001]

Coordinates

chr3:-:22452853..22457385

Molecular Weight (calculated)

19533.1 Da

IEP (calculated)

7.056

GRAVY (calculated)

-0.437

Length

173 amino acids

Sequence
(BLAST)

001: MPQGRDPLVL GQVVGDVLDP FTRSAAMRVM YNSKEIRNGT GLRHSAVVNK PRVEIEGHDR RQLYTLVMVD ADAPSPNSPT DREYLHWLVT DIPETLDASY
101: GNEIVSYESP HPTAGIHRIV LVLFRQEVQQ TIYAPGWRQN FNTRDFSAFY SIGPPVAAIY FNCQRENGCG GRR

Best Arabidopsis Sequence Match ( AT1G65480.1 )
(BLAST)

001: MSINIRDPLI VSRVVGDVLD PFNRSITLKV TYGQREVTNG LDLRPSQVQN KPRVEIGGED LRNFYTLVMV DPDVPSPSNP HLREYLHWLV TDIPATTGTT
101: FGNEIVCYEN PSPTAGIHRV VFILFRQLGR QTVYAPGWRQ NFNTREFAEI YNLGLPVAAV FYNCQRESGC GGRRL

Arabidopsis Description

FTPEBP (phosphatidylethanolamine-binding protein) family protein [Source:TAIR;Acc:AT1G65480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.