Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24826 | Canola | nucleus | 58.6 | 68.72 |
| CDY62049 | Canola | nucleus | 62.81 | 68.06 |
| Bra017735.1-P | Field mustard | nucleus | 60.7 | 66.8 |
| CDY47041 | Canola | nucleus | 60.7 | 66.8 |
| CDX72563 | Canola | nucleus | 65.61 | 66.55 |
| CDX69181 | Canola | nucleus | 60.0 | 63.33 |
| Bra010504.1-P | Field mustard | nucleus | 49.12 | 63.06 |
| GSMUA_Achr1P02630_001 | Banana | nucleus | 9.47 | 57.45 |
| CDX75538 | Canola | nucleus | 51.93 | 56.49 |
| KRH28841 | Soybean | nucleus | 22.11 | 50.0 |
| Bra011648.1-P | Field mustard | nucleus | 45.26 | 49.24 |
| VIT_00s0349g00050.t01 | Wine grape | nucleus | 30.18 | 47.51 |
| PGSC0003DMT400009393 | Potato | nucleus | 27.72 | 47.02 |
| AT2G17770.3 | Thale cress | nucleus | 31.93 | 46.67 |
| Solyc02g083520.2.1 | Tomato | nucleus, plastid | 35.44 | 46.54 |
| KRH76618 | Soybean | nucleus | 29.12 | 46.11 |
| PGSC0003DMT400061403 | Potato | nucleus | 32.98 | 41.41 |
| GSMUA_Achr9P21040_001 | Banana | nucleus | 27.02 | 39.69 |
| GSMUA_Achr5P17850_001 | Banana | nucleus | 32.63 | 38.43 |
| GSMUA_Achr1P02640_001 | Banana | nucleus | 20.0 | 38.26 |
| GSMUA_Achr5P11470_001 | Banana | nucleus | 27.72 | 37.98 |
| GSMUA_Achr5P11220_001 | Banana | nucleus, plastid | 34.39 | 37.26 |
| GSMUA_Achr4P05090_001 | Banana | nucleus | 22.46 | 37.21 |
| GSMUA_Achr4P29580_001 | Banana | nucleus | 24.91 | 36.6 |
| Solyc02g061990.2.1 | Tomato | nucleus | 22.11 | 35.39 |
| GSMUA_Achr2P03490_001 | Banana | nucleus | 24.56 | 34.31 |
| GSMUA_Achr9P24090_001 | Banana | nucleus | 20.0 | 32.2 |
| GSMUA_Achr2P11200_001 | Banana | nucleus | 26.67 | 31.15 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EntrezGene:829744 | EMBL:AB105818 | EMBL:AB105819 | EMBL:AB105820 |
| EMBL:AB105821 | EMBL:AB105822 | ProteinID:AEE86586.1 | ArrayExpress:AT4G35900 | EnsemblPlantsGene:AT4G35900 | RefSeq:AT4G35900 |
| TAIR:AT4G35900 | RefSeq:AT4G35900-TAIR-G | EnsemblPlants:AT4G35900.1 | TAIR:AT4G35900.1 | Unigene:At.31374 | ProteinID:BAC65869.1 |
| ProteinID:BAC65870.1 | ProteinID:BAC65871.1 | ProteinID:BAC65872.1 | ProteinID:BAC65873.1 | ProteinID:CAA18484.1 | ProteinID:CAA21476.1 |
| ProteinID:CAB81499.1 | ProteinID:CAD29860.1 | ncoils:Coil | Symbol:FD | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009648 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009911 | GO:GO:0009987 | GO:GO:0043621 | GO:GO:0045893 |
| GO:GO:2000028 | InterPro:IPR004827 | RefSeq:NP_001329774.1 | RefSeq:NP_195315.3 | PFAM:PF00170 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009046 | PO:PO:0025022 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 |
| PANTHER:PTHR22952:SF211 | UniProt:Q84JK2 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0000055F69 | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
Coordinates
chr4:+:17004522..17006308
Molecular Weight (calculated)
31379.1 Da
IEP (calculated)
10.906
GRAVY (calculated)
-0.970
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQAYTN ELELEVAHLQ AENARLKRQQ DQLKMAAAIQ QPKKNTLQRS STAPF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.