Factsheet for Bra011648.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005783.1-P
Bra009508.1-P
Bra010504.1-P
Bra011648.1-P
Bra015710.1-P
Bra017735.1-P
Bra028815.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35900.1	Bra015710.1-P	AT4G20370.1	19656342
AT4G35900.1	Bra010504.1-P	AT4G35900.1	16099979
AT4G35900.1	Bra011648.1-P	AT4G35900.1	16099979
AT4G35900.1	Bra017735.1-P	AT4G35900.1	16099979
AT4G35900.1	Bra005783.1-P	AT5G03840.1	16099980
AT4G35900.1	Bra009508.1-P	AT5G03840.1	16099980
AT4G35900.1	Bra028815.1-P	AT5G03840.1	16099980

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75538	Canola	nucleus	79.77	79.77
Bra010504.1-P	Field mustard	nucleus	49.24	58.11
Bra017735.1-P	Field mustard	nucleus	50.76	51.35
Bra037251.1-P	Field mustard	nucleus	27.1	50.71
AT4G35900.1	Thale cress	nucleus	49.24	45.26
Bra002090.1-P	Field mustard	nucleus	30.53	43.48
GSMUA_Achr1P02640_001	Banana	nucleus	19.85	34.9
Solyc02g061990.2.1	Tomato	nucleus	23.66	34.83
Solyc02g083520.2.1	Tomato	nucleus, plastid	27.48	33.18
PGSC0003DMT400061403	Potato	nucleus	27.86	32.16
VIT_00s0349g00050.t01	Wine grape	nucleus	21.37	30.94
GSMUA_Achr9P24090_001	Banana	nucleus	19.85	29.38
GSMUA_Achr4P29580_001	Banana	nucleus	21.37	28.87
GSMUA_Achr5P11470_001	Banana	nucleus	22.9	28.85
PGSC0003DMT400009393	Potato	nucleus	17.94	27.98
KRH28841	Soybean	nucleus	13.36	27.78
KRH76618	Soybean	nucleus	19.08	27.78
GSMUA_Achr5P11220_001	Banana	nucleus, plastid	27.48	27.38
GSMUA_Achr5P17850_001	Banana	nucleus	25.19	27.27
GSMUA_Achr9P21040_001	Banana	nucleus	19.47	26.29
GSMUA_Achr4P05090_001	Banana	nucleus	16.03	24.42
GSMUA_Achr2P11200_001	Banana	nucleus	22.14	23.77
GSMUA_Achr2P03490_001	Banana	nucleus	18.32	23.53
GSMUA_Achr1P02630_001	Banana	nucleus	1.91	10.64

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra011648	EnsemblPlants:Bra011648.1	EnsemblPlants:Bra011648.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR004827	UniProt:M4D591	ScanProsite:PS00036	PANTHER:PTHR22952	PANTHER:PTHR22952:SF211
SUPFAM:SSF57959	TMHMM:TMhelix	UniParc:UPI0002546D7A	InterPro:bZIP	SEG:seg	:

Description

AT4G35900 (E=3e-072) FD, FD-1, atbzip14 | FD; DNA binding / protein binding / transcription activator/ transcription factor

Coordinates

chrA01:-:1266338..1267126

Molecular Weight (calculated)

29437.5 Da

IEP (calculated)

9.957

GRAVY (calculated)

-0.660

Length

262 amino acids

Sequence
(BLAST)

001: MMSSAKHQRN HRISVTNKNK ILNTVSSISS SSPSSSSSSL HSSQDSQEAQ KSSLITMEEV WEDIHHLNRH SQHPQHNHEP RFRSHNHQNP DSIFQDFLNG
101: PLNHEPTIPM GSSSNGHTTT VTALFSSSPL PPPATVLSLN SGAGFEFLDN QDPLVTSNLH SHNHLTDVPS FNTSLEDFTC FGKKRGQESN EGSGNRRHKR
201: MIKNRESAAR SRARKQECAS LSSSTNLLLL QKKKCCFSIK MFLFFLKGIW YFIIICRLIQ TS

Best Arabidopsis Sequence Match ( AT4G35900.2 )
(BLAST)

001: MLSSAKHQRN HRLSATNKNQ TLTKVSSISS SSPSSSSSSS STSSSSPLPS QDSQAQKRSL VTMEEVWNDI NLASIHHLNR HSPHPQHNHE PRFRGQNHHN
101: QNPNSIFQDF LKGSLNQEPA PTSQTTGSAP NGDSTTVTVL YSSPFPPPAT VLSLNSGAGF EFLDNQDPLV TSNSNLHTHH HLSNAHAFNT SFEALVPSSS
201: FGKKRGQDSN EGSGNRRHKR MIKNRESAAR SRARKQECAS PLPS

Arabidopsis Description

FDProtein FD [Source:UniProtKB/Swiss-Prot;Acc:Q84JK2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.