Factsheet for Zm00001d001902_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0669600-01	Rice	mitochondrion, plastid	71.72	74.47
TraesCS2B01G572900.1	Wheat	plastid	73.77	73.77
TraesCS2D01G544300.1	Wheat	plastid	72.95	73.55
TraesCS2A01G543100.1	Wheat	plastid	71.72	71.72
OQU82541	Sorghum	plastid	88.52	48.11
Zm00001d050270_P001	Maize	mitochondrion	32.79	38.65
Zm00001d001903_P003	Maize	extracellular, mitochondrion, plastid	41.8	33.66
Zm00001d026572_P001	Maize	endoplasmic reticulum, golgi	40.57	27.35
Zm00001d044460_P001	Maize	cytosol	25.41	25.2
Zm00001d009726_P002	Maize	mitochondrion	23.36	22.44
Zm00001d039653_P005	Maize	extracellular	25.0	17.63
Zm00001d008737_P001	Maize	cytosol, plastid	10.66	12.38

Protein Annotations

EnsemblPlants:Zm00001d001902_P001	EnsemblPlants:Zm00001d001902_T001	EnsemblPlantsGene:Zm00001d001902	EntrezGene:103645786	Gene3D:3.40.50.1820	GO:GO:0003674
GO:GO:0003824	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:IPR029058	InterPro:PLipase/COase/thioEstase	PANTHER:PTHR10655
PANTHER:PTHR10655:SF30	PFAM:PF02230	ProteinID:ONM12360.1	ProteinID:ONM12361.1	SUPFAM:SSF53474	UniParc:UPI000220F535
UniProt:A0A1D6DU51	MapMan:26.8.2.6	:	:	:	:

Description

Carboxylesterase SOBER1

Coordinates

chr2:+:2633360..2636659

Molecular Weight (calculated)

25721.4 Da

IEP (calculated)

4.882

GRAVY (calculated)

0.107

Length

244 amino acids

Sequence
(BLAST)

001: MAATAESPST GGFVLWLHGS GGSGDESRAQ VAPYFSDPGV ASSVRLSFPT APTSFIPCYG DVVITAWFGI SEVPITAKTV RDEKEVLKAV EYVHELIDKE
101: VAAGTSPSNI FVCGMSQGGA LAIASALLYP KTLGGCAVFS GSVPPNKSFA DKVSPEARKT PVLWFHGMAD GVVLFEAGHA GCAFLEELGM SCEFKAYPTL
201: GHSLVDEELQ YFQQWILIRL GMAASGAAET ARPSSSSNHN DHLQ

Best Arabidopsis Sequence Match ( AT4G22300.1 )
(BLAST)

001: MRTSRLKKPI VLLTIALLSS VFFFAFFFLN KSDVSSTSAL RNRDSMARTF ILWLHGLGDS GPANEPIKTL FRSQEFRNTK WLFPSAPPNP VSCNYGAVMP
101: SWFDIPELPL TAGSPKDESS LLKAVKNVHA IIDKEIAGGI NPENVYICGF SQGGALTLAS VLLYPKTIGG GAVFSGWIPF NSSITNQFTE DAKKTPILWS
201: HGIDDKTVLF EAGQAALPFL QQAGVTCEFK AYPGLGHSIS NEELQYLESW LKQRMQSSSS SS

Arabidopsis Description

SOBER1Probable carboxylesterase SOBER1-like [Source:UniProtKB/Swiss-Prot;Acc:Q8GYK2]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.