Factsheet for Zm00001d027540_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
nucleus: 24677780
mitochondrion: 27297264

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048353_P001	Maize	extracellular	96.89	96.89
OQU93289	Sorghum	cytosol	95.11	95.11
HORVU4Hr1G081150.1	Barley	cytosol	82.22	82.96
TraesCS4D01G327800.1	Wheat	cytosol	82.22	82.96
TraesCS4B01G330900.1	Wheat	cytosol	81.78	82.51
TraesCS5A01G502300.1	Wheat	cytosol	81.78	82.51
Os03t0135100-01	Rice	extracellular	81.78	81.78
Zm00001d048354_P001	Maize	extracellular	76.44	76.11
Zm00001d027541_P001	Maize	extracellular	76.44	76.11
GSMUA_Achr1P02270_001	Banana	cytosol	59.56	58.26
Zm00001d027542_P001	Maize	endoplasmic reticulum	46.22	43.51
Zm00001d042216_P001	Maize	extracellular, plasma membrane	34.22	34.84
Zm00001d029801_P002	Maize	extracellular	43.11	32.88
Zm00001d027539_P001	Maize	extracellular, mitochondrion, plastid	44.44	32.79
Zm00001d012675_P001	Maize	plastid	30.67	32.24
Zm00001d024839_P001	Maize	extracellular	30.22	30.49
Zm00001d021470_P001	Maize	cytosol	40.44	30.33
Zm00001d010870_P001	Maize	extracellular	29.78	28.63
Zm00001d043344_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.0	28.12
Zm00001d029799_P002	Maize	cytosol	33.78	27.74
Zm00001d021469_P002	Maize	cytosol	39.56	3.17

Protein Annotations

KEGG:00480+2.5.1.18	KEGG:00980+2.5.1.18	KEGG:00982+2.5.1.18	KEGG:00983+2.5.1.18	Gene3D:1.20.1050.10	MapMan:18.8.1.5
Gene3D:3.40.30.10	EntrezGene:541830	EMBL:AF244677	EMBL:EU969503	GO:GO:0003674	GO:GO:0003824
GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0016740	InterPro:GST_C	InterPro:GST_Phi_C
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	ProteinID:ONL93400.1
PFAM:PF00043	PFAM:PF13417	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR43900	PANTHER:PTHR43900:SF5
UniProt:Q9FQC7	SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI000009E7AA	EnsemblPlantsGene:Zm00001d027540
EnsemblPlants:Zm00001d027540_P001	EnsemblPlants:Zm00001d027540_T001	:	:	:	:

Description

glutathione S-transferase12 glutathione S-transferase12

Coordinates

chr1:-:7878334..7879915

Molecular Weight (calculated)

25777.5 Da

IEP (calculated)

7.662

GRAVY (calculated)

-0.564

Length

225 amino acids

Sequence
(BLAST)

001: MAAGLQVFGQ PASTDVARVL TCLFEKNLEF ELVRTDTFKK SHKLPEFIKL RDPTGQVTFK HGDKTIVDSR TICRYLCTQF PDDGYKKLYG TGSLERASIE
101: QWLQAEAQSF DAPSSELAFQ LAFAPHLKDV RPDEARVAEN EKKLHSMLGV YDDILSKNEY LAGDDFTLAD LSHLPNSHYI VNSSDRGRKL FTARKHVARW
201: YDKISTRDSW RQVMKMQREH PGAFE

Best Arabidopsis Sequence Match ( AT2G47730.1 )
(BLAST)

001: MGAIQARLPL FLSPPSIKHH TFLHSSSSNS NFKIRSNKSS SSSSSSIIMA SIKVHGVPMS TATMRVLATL YEKDLQFELI PVDMRAGAHK QEAHLALNPF
101: GQIPALEDGD LTLFESRAIT QYLAEEYSEK GEKLISQDCK KVKATTNVWL QVEGQQFDPN ASKLAFERVF KGMFGMTTDP AAVQELEGKL QKVLDVYEAR
201: LAKSEFLAGD SFTLADLHHL PAIHYLLGTD SKVLFDSRPK VSEWIKKISA RPAWAKVIDL QKQ

Arabidopsis Description

GSTF8Glutathione S-transferase F8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96266]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.