Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plasma membrane 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029728_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 31.4 | 93.3 |
| EER89631 | Sorghum | plasma membrane | 81.0 | 81.46 |
| TraesCS7D01G218400.1 | Wheat | nucleus, peroxisome, plasma membrane | 54.11 | 56.42 |
| TraesCS7B01G123900.1 | Wheat | nucleus, peroxisome, plasma membrane | 54.03 | 56.15 |
| Os06t0292400-00 | Rice | plasma membrane | 53.46 | 54.52 |
| HORVU7Hr1G044020.6 | Barley | cytosol, peroxisome | 13.61 | 53.31 |
| TraesCS7A01G216900.1 | Wheat | plasma membrane | 35.1 | 50.76 |
| Zm00001d052478_P001 | Maize | plasma membrane | 28.82 | 39.21 |
| Zm00001d030604_P001 | Maize | plasma membrane | 9.18 | 38.38 |
| Zm00001d045859_P001 | Maize | plastid | 17.95 | 37.86 |
| Zm00001d037389_P001 | Maize | plasma membrane | 28.1 | 36.58 |
| Zm00001d048772_P001 | Maize | plasma membrane | 24.07 | 36.42 |
| Zm00001d012387_P001 | Maize | plasma membrane | 15.14 | 35.61 |
| Zm00001d000425_P001 | Maize | plasma membrane | 6.84 | 35.42 |
| Zm00001d045793_P001 | Maize | plasma membrane | 23.75 | 34.58 |
| Zm00001d028649_P001 | Maize | plasma membrane | 25.12 | 34.51 |
| Zm00001d037375_P001 | Maize | plasma membrane | 5.48 | 32.08 |
| Zm00001d045774_P001 | Maize | plasma membrane | 6.84 | 29.21 |
| Zm00001d045778_P001 | Maize | plasma membrane | 6.04 | 27.27 |
Protein Annotations
| EnsemblPlants:Zm00001d037386_P001 | EnsemblPlants:Zm00001d037386_T001 | EnsemblPlantsGene:Zm00001d037386 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:PGG_dom | PANTHER:PTHR24177 | PANTHER:PTHR24177:SF43 | PFAM:PF13962 | ProteinID:AQK83849.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000842B491 | UniProt:A0A1D6LXE9 | MapMan:35.2 | : | : |
Description
transmembrane protein20Transmembrane protein20
Coordinates
chr6:-:124045008..124049689
Molecular Weight (calculated)
136583.0 Da
IEP (calculated)
8.635
GRAVY (calculated)
-0.017
Length
1242 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASTAATPEA GSNHSEDGTT VELPIVVTGS TSQESIDTPS TRYLLAPSHV SSSSFTADIE LLWRLRKYLL LLGILAVGVT YNAGLTPPGG FWSKNTQGQS
0101: GHEAGDPVLR ALFFPRHEVF FYCNATAFAA SLVLIILLLS KNVARQRLWL RSMQLTMVLD LFSLMGAYAA GSCRAVKSSI YIWVLVLSVF TYIMIHILVF
0201: MKVVPRFVSE KRFVPKRLKD VARSVERWIL SRCGVHRSEK NSSHEKDLEE ARKFTLVLVT FAATVAYQAG LSPPGGFWAE NDENKTPATS MLRSGNLPRY
0301: NTFVVCNSTS FVASLVTIIL LLSPELSRHG IRSRAVTVCV VVDILGLVGA YAAGSCRSVV TSVSAVLVAV LVWICFAVLA GIFVNRSVAE WFGKKIKPDI
0401: MRCIDRFGRV FSSNHGRKRS RNPEGENSIA SHQQTEESIK GEAEAETARV PEYQLPYHQL APDIEEGECP GEQQSPGKQQ PTNIEVVSIS EHASVNEKQA
0501: ENSSSVMCKL GSQSTDPNSA ANEAMTETET ENIQDANMEE QQSSLVDGLK TPTTVAGMSN HEHQSVDNHV VQNLIRQTFS TEDQESTTVE CLSDIAPNNH
0601: NGATNSFKEE KEASEQHLQA NEIESFRTNN VARPVENGNV GMYEVTPRQD DGDVNAGANP TDEHLKKSRT YLLLLAILAV SLAYQSGLNP PGGFWTQRGT
0701: NNSPKSTHHR PYHLPGDPIL EDTRHRRYIA FFYLNAIAFV ASLVMIIMLL NRRMSYKGIK RYALQMAMIV DLLALTGSYI MGSSRGTKSS IYIWLLVCLV
0801: LVYVAVHVLI ATHVIPEGCK KVVAQKIENF SCRYIWTKAS FRNRGIDGNG SDCEAGQSQR SDADDKTWER RRNLLLMLAV LAATVTYQAG INPPGGVWSD
0901: DSSASGKPGD PILQHNNSKR YDVFYYSNSL SFVASVVITI LLVNKESCEH GIKSYALRVC LVVGLVSLLI AYSAGSSRKA RESIYLIVIA VAVLIALVIQ
1001: VLLLSCTQDS LRGPTGQFIE RLLQLLFGTD KAWHGDTSKQ KESSGRPEKK VRKRHKYLML LAVLAASITY QAGLNPPGGF WSDDNEGHVE GNPGLKPPGA
1101: LWSDNKGHLA GNPVLLDINP RRYEIFFCFN SISFMASIVV VMFLLNKSAR KKAVPLEVLH LIMILDLLAL MTAFAAGSCR KFRTSVYVYG LVLGVVVYLV
1201: IAVLLSSGIA KCLRPMDRNR VSSQRSPIRA PTASTRILGD HA
0101: GHEAGDPVLR ALFFPRHEVF FYCNATAFAA SLVLIILLLS KNVARQRLWL RSMQLTMVLD LFSLMGAYAA GSCRAVKSSI YIWVLVLSVF TYIMIHILVF
0201: MKVVPRFVSE KRFVPKRLKD VARSVERWIL SRCGVHRSEK NSSHEKDLEE ARKFTLVLVT FAATVAYQAG LSPPGGFWAE NDENKTPATS MLRSGNLPRY
0301: NTFVVCNSTS FVASLVTIIL LLSPELSRHG IRSRAVTVCV VVDILGLVGA YAAGSCRSVV TSVSAVLVAV LVWICFAVLA GIFVNRSVAE WFGKKIKPDI
0401: MRCIDRFGRV FSSNHGRKRS RNPEGENSIA SHQQTEESIK GEAEAETARV PEYQLPYHQL APDIEEGECP GEQQSPGKQQ PTNIEVVSIS EHASVNEKQA
0501: ENSSSVMCKL GSQSTDPNSA ANEAMTETET ENIQDANMEE QQSSLVDGLK TPTTVAGMSN HEHQSVDNHV VQNLIRQTFS TEDQESTTVE CLSDIAPNNH
0601: NGATNSFKEE KEASEQHLQA NEIESFRTNN VARPVENGNV GMYEVTPRQD DGDVNAGANP TDEHLKKSRT YLLLLAILAV SLAYQSGLNP PGGFWTQRGT
0701: NNSPKSTHHR PYHLPGDPIL EDTRHRRYIA FFYLNAIAFV ASLVMIIMLL NRRMSYKGIK RYALQMAMIV DLLALTGSYI MGSSRGTKSS IYIWLLVCLV
0801: LVYVAVHVLI ATHVIPEGCK KVVAQKIENF SCRYIWTKAS FRNRGIDGNG SDCEAGQSQR SDADDKTWER RRNLLLMLAV LAATVTYQAG INPPGGVWSD
0901: DSSASGKPGD PILQHNNSKR YDVFYYSNSL SFVASVVITI LLVNKESCEH GIKSYALRVC LVVGLVSLLI AYSAGSSRKA RESIYLIVIA VAVLIALVIQ
1001: VLLLSCTQDS LRGPTGQFIE RLLQLLFGTD KAWHGDTSKQ KESSGRPEKK VRKRHKYLML LAVLAASITY QAGLNPPGGF WSDDNEGHVE GNPGLKPPGA
1101: LWSDNKGHLA GNPVLLDINP RRYEIFFCFN SISFMASIVV VMFLLNKSAR KKAVPLEVLH LIMILDLLAL MTAFAAGSCR KFRTSVYVYG LVLGVVVYLV
1201: IAVLLSSGIA KCLRPMDRNR VSSQRSPIRA PTASTRILGD HA
001: MKLLRKTVKV KAKNLDGKTA MDILQTHQSP CFPVAKKLLR SAKERPFCGS TTTLAGYLSR NLSFIEKRNS LLGLSNLSMT KDRSINASDP RNAILVVAIL
101: IVTATYQAGL SPPGGFWQDT NDGRYGHMAG QMTMPFIYAF FFIGLNGFAF VSSLYVIIII TIGLPKWKLL YGSVAALSIA ALASYSTIFP SSYDANSYLS
201: VLTFLCAYIS IICIMMFATF MAFIVDKHRR YQVDFPASCF SSSQEP
101: IVTATYQAGL SPPGGFWQDT NDGRYGHMAG QMTMPFIYAF FFIGLNGFAF VSSLYVIIII TIGLPKWKLL YGSVAALSIA ALASYSTIFP SSYDANSYLS
201: VLTFLCAYIS IICIMMFATF MAFIVDKHRR YQVDFPASCF SSSQEP
Arabidopsis Description
Ankyrin repeat family protein [Source:TAIR;Acc:AT4G11000]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.