Factsheet for Zm00001d053612_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 2
mitochondrion 3
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04729	Sorghum	mitochondrion	96.4	96.46
HORVU6Hr1G036800.21	Barley	plasma membrane	89.26	88.95
TraesCS6A01G178500.1	Wheat	plasma membrane	89.05	88.74
TraesCS6B01G205900.1	Wheat	plasma membrane	88.77	88.71
TraesCS6D01G166100.1	Wheat	plasma membrane	88.91	88.61
GSMUA_Achr5P06180_001	Banana	plasma membrane	83.99	87.07
GSMUA_AchrUn_...	Banana	mitochondrion, plasma membrane	84.34	86.31
Zm00001d048860_P001	Maize	cytosol, nucleus, plasma membrane	85.24	85.06
Zm00001d044443_P001	Maize	cytosol, mitochondrion, nucleus, plasma membrane	67.98	67.75
Zm00001d011315_P002	Maize	plasma membrane	67.29	67.24
Zm00001d011319_P003	Maize	cytosol, mitochondrion, peroxisome, plasma membrane	67.91	66.99
Zm00001d044442_P036	Maize	plasma membrane	67.78	62.13
Zm00001d021647_P003	Maize	plastid	57.17	57.05
Zm00001d036986_P002	Maize	plasma membrane	59.53	56.96
CDY64951	Canola	cytosol, peroxisome, plasma membrane	53.71	56.16
Zm00001d009037_P003	Maize	plastid	56.96	56.11
Zm00001d025012_P003	Maize	plastid	57.1	56.09
Bra025424.1-P	Field mustard	cytosol, nucleus, plasma membrane	54.4	56.03
CDX85303	Canola	cytosol	54.26	55.89
Zm00001d046277_P002	Maize	cytosol, nucleus, plasma membrane	59.6	55.84
AT3G30842.1	Thale cress	cytosol	54.75	55.71
Zm00001d034940_P003	Maize	plastid	56.69	54.9
Zm00001d039631_P002	Maize	plasma membrane	56.83	54.89
Zm00001d043598_P003	Maize	cytosol, nucleus, plasma membrane	56.48	54.77
Zm00001d003354_P002	Maize	cytosol, peroxisome, plasma membrane	52.04	52.41
Zm00001d052726_P008	Maize	cytosol, nucleus, plasma membrane	47.47	50.04
Zm00001d019961_P001	Maize	plasma membrane	36.45	49.81
Zm00001d031724_P003	Maize	plasma membrane	47.61	49.21
Zm00001d023392_P002	Maize	cytosol, peroxisome, plasma membrane	50.1	49.12

Protein Annotations

EntrezGene:103654816	MapMan:24.1.3.2.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABCG_PDR_1	InterPro:ABCG_PDR_2
InterPro:ABC_2_trans	InterPro:ABC_trans_N	InterPro:ABC_transporter-like	ProteinID:AQK59901.1	ProteinID:AQK59902.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	UniProt:K7UR04	InterPro:P-loop_NTPase
InterPro:PDR_assoc	PFAM:PF00005	PFAM:PF01061	PFAM:PF08370	PFAM:PF14510	PFscan:PS50893
PANTHER:PTHR19241	PANTHER:PTHR19241:SF443	SMART:SM00382	SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI00022174B7
EnsemblPlantsGene:Zm00001d053612	EnsemblPlants:Zm00001d053612_P003	EnsemblPlants:Zm00001d053612_T003	SEG:seg	:	:

Description

ABC transporter G family member 40

Coordinates

chr4:-:236474079..236481803

Molecular Weight (calculated)

162405.0 Da

IEP (calculated)

6.875

GRAVY (calculated)

0.066

Length

1443 amino acids

Sequence
(BLAST)

0001: MDLVQMGSIA GGSMRRTASS WRASGRSDAF GRSVREEDDE EALRWAAIEK LPTYDRMRKG ILTGNAAGAG VEEVDIQGLG MQERKNLIER LVRTAEEDNE
0101: RFLLKLRDRM ELVGIDNPTI EVRFENLNID AEAYVGNRGV PTMTNFFSNK VMDVLSAMHI VSSGKRPVSI LHDISGVIRP GRMSLLLGPP GSGKTSLLLA
0201: LSGKLDSNLK VSGRVTYNGH DMDEFVPQRT SAYIGQHDVH VGEMTVRETL AFSARCQGVG TRYDMLTELS RREKEANIKP DPDVDVYMKA ISVEGQESVV
0301: TDYILKILGL EICADTMVGD SMIRGISGGQ KKRVTTGEML VGPAKALFMD EISTGLDSST TYQIVNSLRQ SVHILGGTAL IALLQPAPET YELFDDIVLL
0401: SEGQIVYQGP RENVLEFFEV MGFKCPERKG VADFLQEVTS RKDQHQYWCR RDEPYRYISV NDFSEAFKAF HVGRKLGSDL KVPFDRTRNH PAALTTSKYG
0501: ISKMELLRAC FSREWLLMKR NSFVYIFKVV QLIILGTIAM TVFLRTTMHR RGVEDGVIFL GAMFLGLVTH LFNGFAELAM SIAKLPIFYK QRDLLFYPSW
0601: AYASPTWLLK IPISFLECAV WIGMTYYVIG FDPSIERFFR HYLLLVLVSQ MASGLFRLLA ALGREMVVAD TFGSFAQLVL LILGGFLIAR DNIKKWWIWG
0701: YWSSPLMYAQ NAVAVNEFLG HSWQMVVDRT HSNDTLGVQI LKARGIFVDP NWYWIGVGAL LGYIMLFNVL FVLFLDWLGP LGKGQAVVSE EELREKHVNR
0801: TGQNVELLPL GTASQNPPSD GRGEIAGAES RKRGMVLPFT PLSITFDNIK YSVDMPQEMK DKGITEDRLL LLKGVSGAFR PGVLTALMGV SGAGKTTLMD
0901: VLAGRKTGGH IEGDISISGY PKKQETFARI AGYCEQNDIH SPHVTVYESL LYSAWLRLPH EVDSEARKMF VEEVMELVEL TPLRGALVGL PGVNGLSTEQ
1001: RKRLTIAVEL VANPSIIFMD EPTSGLDARA AAIVMRTVRN TVDTGRTVVC TIHQPSIDIF EAFDELFLMK RGGEEIYVGP LGRNSCHLIN YFEGIEGVKK
1101: IKDGYNPATW MLEVTTLAQE DILGINFAEV YRNSDLYRRN KDLISELSTP PPGSKDLYFP TQYSQSFLTQ CMACLWKQHK SYWRNPSYTA TRIFFTTVIA
1201: LIFGTIFLNL GKKIGTRQDL FNSLGSMYAA VLFIGIQNGQ TVQPIVDVER TVFYREKAAG MYSALPYAFA QVLIEIPHIF LQTVVYGLIV YSLIGFDWTV
1301: AKFFWYMFFM FFTFMYFTFY GMMAVAMTPN SDIAAIVSTA FYAIWNIFAG FLIPRPRIPI WWRWYSWACP VAWTLYGLVA SQFGDIADIR LEDDGELVKD
1401: FVNRFFGFEH DNLGYVATAV VGFTVLFAFV FAFSIKVFNF QRR

Best Arabidopsis Sequence Match ( AT1G15520.1 )
(BLAST)

0001: MEGTSFHQAS NSMRRNSSVW KKDSGREIFS RSSREEDDEE ALRWAALEKL PTFDRLRKGI LTASHAGGPI NEIDIQKLGF QDTKKLLERL IKVGDDEHEK
0101: LLWKLKKRID RVGIDLPTIE VRFDHLKVEA EVHVGGRALP TFVNFISNFA DKFLNTLHLV PNRKKKFTIL NDVSGIVKPG RMALLLGPPS SGKTTLLLAL
0201: AGKLDQELKQ TGRVTYNGHG MNEFVPQRTA AYIGQNDVHI GEMTVRETFA YAARFQGVGS RYDMLTELAR REKEANIKPD PDIDIFMKAM STAGEKTNVM
0301: TDYILKILGL EVCADTMVGD DMLRGISGGQ KKRVTTGEML VGPSRALFMD EISTGLDSST TYQIVNSLRN YVHIFNGTAL ISLLQPAPET FNLFDDIILI
0401: AEGEIIYEGP RDHVVEFFET MGFKCPPRKG VADFLQEVTS KKDQMQYWAR RDEPYRFIRV REFAEAFQSF HVGRRIGDEL ALPFDKTKSH PAALTTKKYG
0501: VGIKELVKTS FSREYLLMKR NSFVYYFKFG QLLVMAFLTM TLFFRTEMQK KTEVDGSLYT GALFFILMML MFNGMSELSM TIAKLPVFYK QRDLLFYPAW
0601: VYSLPPWLLK IPISFMEAAL TTFITYYVIG FDPNVGRLFK QYILLVLMNQ MASALFKMVA ALGRNMIVAN TFGAFAMLVF FALGGVVLSR DDIKKWWIWG
0701: YWISPIMYGQ NAILANEFFG HSWSRAVENS SETLGVTFLK SRGFLPHAYW YWIGTGALLG FVVLFNFGFT LALTFLNSLG KPQAVIAEEP ASDETELQSA
0801: RSEGVVEAGA NKKRGMVLPF EPHSITFDNV VYSVDMPQEM IEQGTQEDRL VLLKGVNGAF RPGVLTALMG VSGAGKTTLM DVLAGRKTGG YIDGNITISG
0901: YPKNQQTFAR ISGYCEQTDI HSPHVTVYES LVYSAWLRLP KEVDKNKRKI FIEEVMELVE LTPLRQALVG LPGESGLSTE QRKRLTIAVE LVANPSIIFM
1001: DEPTSGLDAR AAAIVMRTVR NTVDTGRTVV CTIHQPSIDI FEAFDELFLL KRGGEEIYVG PLGHESTHLI NYFESIQGIN KITEGYNPAT WMLEVSTTSQ
1101: EAALGVDFAQ VYKNSELYKR NKELIKELSQ PAPGSKDLYF PTQYSQSFLT QCMASLWKQH WSYWRNPPYT AVRFLFTIGI ALMFGTMFWD LGGKTKTRQD
1201: LSNAMGSMYT AVLFLGLQNA ASVQPVVNVE RTVFYREQAA GMYSAMPYAF AQVFIEIPYV LVQAIVYGLI VYAMIGFEWT AVKFFWYLFF MYGSFLTFTF
1301: YGMMAVAMTP NHHIASVVSS AFYGIWNLFS GFLIPRPSMP VWWEWYYWLC PVAWTLYGLI ASQFGDITEP MADSNMSVKQ FIREFYGYRE GFLGVVAAMN
1401: VIFPLLFAVI FAIGIKSFNF QKR

Arabidopsis Description

ABCG40ABC transporter G family member 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9E1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.